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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MMNGRPGHEPLKFLPDEARSLPPPKLNDPRLVYMGLLGYCTGLMDNMLRMRPVMRAGLHRQLLFVTSFVFAGYFYLKRQN
YLYAVKDHDMFGYIKLHPEDFPEKEKKTYAEILEPFHPVR

The query sequence (length=120) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8iaq:d 120 120 1.0000 1.0000 1.0000 3.30e-86 8ib6:d, 8ibb:d, 8ibf:d, 8ic4:d
2 7v2h:g 122 120 0.7667 0.7541 0.7667 9.61e-68 5gup:g, 8ud1:1d, 8ugi:1d, 7v2c:g, 7v2d:g, 7v2e:g, 7v2f:g, 7v2k:g, 7v2r:g, 7v30:g, 7v31:g, 7v32:g, 7v33:g, 7v3m:g, 7vbl:g, 7vbp:g, 7vc0:g, 7vwl:g, 7vxs:g, 7vy1:g, 7vy9:g, 7vye:g, 7vyg:g, 7vyi:g, 7vys:g, 7vz8:g, 7vzv:g, 7vzw:g, 7w00:g, 7w0h:g, 7w0r:g, 7w0y:g, 7w1o:g, 7w1p:g, 7w1t:g, 7w1u:g, 7w1v:g, 7w1z:g, 7w20:g, 7w2k:g, 7w2l:g, 7w2r:g, 7w2u:g, 7w2y:g, 7w31:g, 7w32:g, 7w35:g, 7w4c:g, 7w4d:g, 7w4e:g, 7w4f:g, 7w4g:g, 7w4j:g, 7w4k:g, 7w4l:g, 7w4m:g, 7w4n:g, 7w4q:g
3 5xtc:g 119 119 0.6833 0.6891 0.6891 3.03e-61 5xtd:g, 5xth:g, 5xti:g, 5xti:Bg
4 7r41:d 113 110 0.6750 0.7168 0.7364 1.08e-60 7r42:d, 7r44:d, 7r45:d, 7r47:d, 7r48:d, 7r4c:d, 7r4d:d, 7r4f:d, 7r4g:d
5 5fhd:B 400 25 0.1083 0.0325 0.5200 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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