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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGR
CFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKE
IGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDKLP

The query sequence (length=201) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5iy6:M 260 201 1.0000 0.7731 1.0000 1.33e-148 8bvw:M, 8byq:M, 8bz1:M, 7edx:R, 7eg7:R, 7eg8:R, 7eg9:R, 7ega:R, 7egb:R, 7egc:R, 7ena:BA, 7enc:BA, 8gxq:BA, 8gxs:BA, 5iya:M, 7lbm:O, 7nvr:M, 7nvs:M, 7nvt:M, 7nvy:M, 7nvz:M, 7zwd:M, 7zx7:M
2 5iy7:M 310 201 1.0000 0.6484 1.0000 5.58e-148 1c9b:A, 1c9b:E, 1c9b:I, 1c9b:M, 1c9b:Q, 1dl6:A, 5iy8:M, 5iy9:M, 5iyb:M, 5iyc:M, 5iyd:M, 7nvu:M, 7nw0:M, 6o9l:M, 2phg:A, 1rly:A, 8s51:M, 8s52:M, 8s5n:M, 1vol:A, 8wak:R, 8wal:R, 8wan:R, 8wao:R, 8wap:R, 8waq:R, 8war:R, 8was:R, 7zwc:M, 7zx8:M, 7zxe:M
3 1d3u:B 201 176 0.2935 0.2935 0.3352 3.86e-35 1ais:B
4 1d3u:B 201 97 0.1891 0.1891 0.3918 7.27e-09 1ais:B
5 7ml4:M 234 177 0.2836 0.2436 0.3220 7.59e-29 5fyw:M, 5fz5:M
6 4v1n:M 299 177 0.2836 0.1906 0.3220 2.16e-27 4bbr:M, 4bbs:M, 4v1o:M
7 8cen:M 310 189 0.2935 0.1903 0.3122 2.15e-26 8ceo:M, 5fmf:P, 6gyk:M, 6gyl:M, 6gym:M, 7ml0:M, 7ml1:M, 7ml2:M, 7o4i:M, 7o4j:M, 7o72:M, 7o73:M, 7o75:M, 5oqj:M, 5oqm:M, 7zs9:M, 7zsa:M, 7zsb:M
8 6cnb:R 522 178 0.2239 0.0862 0.2528 4.96e-13 8cen:O, 8ceo:O, 6cnc:R, 6cnd:R, 6cnf:R, 6eu0:Y, 6f40:U, 6f41:U, 6f42:U, 6f44:U, 8ffz:H, 5fmf:Q, 5fyw:O, 5fz5:O, 6gyk:O, 6gyl:O, 6gym:O, 7ml0:O, 7ml1:O, 7ml2:O, 7ml4:O, 1ngm:A, 1ngm:E, 1ngm:I, 1ngm:M, 1nh2:A, 7o4i:O, 7o4j:O, 7o72:O, 7o73:O, 7o75:O, 7oh9:K, 7oha:K, 7ohb:K, 5oqj:O, 5oqm:O, 7q5b:Y, 1rm1:A, 5sva:j, 4v1n:O, 4v1o:O, 1ytb:A, 1ytb:B, 1ytf:A, 7z7n:D, 7zb5:D, 7zb5:G, 7zs9:O, 7zsa:O, 7zsb:O
9 6eu0:Z 339 178 0.2239 0.1327 0.2528 8.35e-13 6f40:V, 6f41:V, 6f42:V, 6f44:V, 7q5b:Z
10 8ity:V 361 165 0.1791 0.0997 0.2182 3.75e-06 8iue:V, 8iuh:V, 5n9g:A, 5n9g:F, 4roc:A, 4rod:A, 4roe:A
11 8g9t:F 261 101 0.1144 0.0881 0.2277 0.91 8g9t:H
12 8abs:A 394 116 0.1592 0.0812 0.2759 1.1 8abr:A, 5ofq:A, 5ofq:B, 5ofq:C, 5ofq:D
13 7suk:LP 359 34 0.0547 0.0306 0.3235 2.8 5wlc:LP
14 3vfq:A 375 74 0.1144 0.0613 0.3108 3.4 4d86:A, 5o2d:A, 3q6z:A, 3q71:A
15 7d4i:B6 377 34 0.0547 0.0292 0.3235 4.1 7ajt:UF, 7d5s:B6, 7d5t:B6, 7d63:B6, 6ke6:B6, 6lqp:B6, 6lqq:B6, 6lqr:B6, 6lqs:B6, 6lqt:B6, 6lqu:B6, 6lqv:B6, 6zqa:UF, 6zqb:UF, 6zqc:UF
16 5gxd:A 627 43 0.0647 0.0207 0.3023 6.5
17 5t5h:I 192 41 0.0697 0.0729 0.3415 8.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218