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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MMKNILAIQSHVVYGHAGNSAAEFPMRRLGANVWPLNTVQFSNHTQYGKWTGCVMPPSHLTEIVQGIAAIDKLHTCDAVL
SGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVMGHPEKGCIVAPGVAEFHVRHGLPASDIIAPNLVELEILCEHAVNN
VEEAVLAARELIAQGPQIVLVKHLARAGYSRDRFEMLLVTADEAWHISRPLVDFGMRQPVGVGDVTSGLLLVKLLQGATL
QEALEHVTAAVYEIMVTTKAMQEYELQVVAAQDRIAKPEHYFSATKL

The query sequence (length=287) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1td2:A 287 287 1.0000 1.0000 1.0000 0.0 1td2:B
2 5b6a:A 288 284 0.5714 0.5694 0.5775 1.10e-118
3 1rfu:A 312 180 0.2334 0.2147 0.3722 2.74e-32 1lhr:A, 1lhr:B, 1rft:A, 1rfu:B, 1rfu:C, 1rfu:D, 1rfu:E, 1rfu:F, 1rfu:G, 1rfu:H, 1rfv:A, 1rfv:B, 1ygj:A, 1ygk:A, 1yhj:A
4 4en4:A 310 180 0.2230 0.2065 0.3556 1.09e-31 2ajp:A, 2ajp:B, 4en4:B, 4eoh:A, 4eoh:B, 3fhx:A, 3fhx:B, 3fhy:A, 3fhy:B, 3keu:A, 3keu:B, 8wr2:A, 8wr2:B, 2yxt:A, 2yxt:B, 2yxu:A, 2yxu:B
5 6yk0:A 309 180 0.2334 0.2168 0.3722 3.35e-31 6yk0:B, 6yk0:C, 6yk0:D, 6yk1:A, 6yk1:B, 6yk1:C, 6yk1:D
6 2ddo:A 263 266 0.2718 0.2966 0.2932 4.19e-31 2ddw:A, 2ddw:B
7 5zwb:A 271 259 0.2613 0.2768 0.2896 1.13e-26 5zw9:A, 5zwa:A, 5zwa:B
8 6k8z:B 298 291 0.3031 0.2919 0.2990 7.93e-26 6k8z:A, 6k90:A, 6k90:B, 6k91:A, 6k91:B, 6k92:A, 6k92:B
9 3zs7:A 277 280 0.2648 0.2744 0.2714 1.84e-21
10 6su9:A 295 298 0.2753 0.2678 0.2651 2.94e-16 6su9:B
11 4s1h:A 287 289 0.2369 0.2369 0.2353 1.67e-14 4s1h:B, 4s1i:A, 4s1i:B
12 3mbh:A 290 239 0.2265 0.2241 0.2720 4.08e-14 3mbh:B, 3mbh:C, 3mbh:D, 3mbh:E, 3mbh:F, 3mbj:A
13 7r8y:A 228 107 0.1324 0.1667 0.3551 7.71e-07
14 4c5k:D 276 107 0.1080 0.1123 0.2897 1.52e-05 4c5k:A, 4c5k:B, 4c5k:C, 4c5l:A, 4c5l:B, 4c5l:C, 4c5l:D, 4c5m:A, 4c5m:B, 4c5m:C, 4c5m:D, 4c5n:A, 4c5n:B, 4c5n:C, 4c5n:D
15 4ywr:A 228 104 0.1010 0.1272 0.2788 0.21
16 7l07:A 214 123 0.1115 0.1495 0.2602 0.45
17 3n1c:A 309 110 0.0976 0.0906 0.2545 0.69 3cqd:A, 3cqd:B, 3n1c:D, 3n1c:B, 3n1c:C, 3umo:A, 3umo:B, 3ump:A, 3ump:B, 3uqd:A, 3uqd:C, 3uqd:B, 3uqd:D, 3uqe:A, 3uqe:B
18 6r7b:A 454 62 0.0767 0.0485 0.3548 0.70 6r7b:B, 6r7b:C, 6r9r:B, 6r9r:A, 6r9r:C
19 8s5h:A 507 106 0.1080 0.0611 0.2925 0.85 4coo:A, 4coo:B, 1jbq:A, 1jbq:B, 1jbq:C, 1jbq:D, 1jbq:E, 1jbq:F, 4l0d:A, 4l0d:B, 4l27:B, 4l27:D, 4l27:A, 4l27:C, 4l28:A, 4l28:B, 4l28:C, 4l28:D, 4l3v:B, 4l3v:A, 4l3v:C, 1m54:A, 1m54:B, 1m54:C, 1m54:D, 1m54:E, 1m54:F, 5mms:A, 5mms:F, 5mms:B, 5mms:C, 5mms:D, 5mms:E, 4pcu:A, 4pcu:B, 7qgt:A, 7qgt:B, 8s5h:B, 8s5h:C, 8s5h:D, 8s5h:E, 8s5h:F, 8s5h:G, 8s5h:H, 8s5i:A, 8s5i:B, 8s5i:C, 8s5i:D, 8s5i:E, 8s5i:F, 8s5j:A, 8s5j:B, 8s5j:C, 8s5j:D, 8s5j:E, 8s5j:F, 8s5j:G, 8s5j:H, 8s5j:I, 8s5j:J, 8s5k:A, 8s5k:B, 8s5k:C, 8s5k:D, 8s5k:E, 8s5k:F, 8s5k:G, 8s5k:H, 8s5l:A, 8s5l:B, 8s5l:C, 8s5l:D, 8s5m:A, 8s5m:B, 8s5m:C, 8s5m:D, 8s5m:E, 8s5m:F, 8s5m:G, 8s5m:H, 8s5m:I, 8s5m:J, 8stw:A, 8stw:B, 8stw:C, 8stw:D, 8stw:E, 8stw:F, 4uuu:A, 4uuu:B
20 3aal:A 298 71 0.0767 0.0738 0.3099 1.5
21 1gqt:B 307 102 0.1045 0.0977 0.2941 2.5 1gqt:A, 1gqt:C, 1gqt:D, 1rk2:A, 1rk2:B, 1rk2:C, 1rk2:D, 1rkd:A, 1rks:A
22 5z6t:A 317 56 0.0662 0.0599 0.3393 2.8 5z6t:B
23 5o1l:A 375 55 0.0592 0.0453 0.3091 3.6 5o1l:B, 5o1m:A, 5o1m:B
24 8xvg:L 3485 107 0.1080 0.0089 0.2897 3.8 8xvv:L
25 7ktr:A 3042 107 0.1080 0.0102 0.2897 4.1
26 1xp3:A 297 83 0.0767 0.0741 0.2651 5.0
27 6d9f:B 322 105 0.0941 0.0839 0.2571 5.7 6d9f:A
28 1k8c:B 319 45 0.0592 0.0533 0.3778 7.5 1k8c:A, 1k8c:C, 1k8c:D, 1mi3:A, 1mi3:B, 1mi3:C, 1mi3:D, 1r38:A, 1r38:B, 1r38:C, 1r38:D, 1sm9:A, 1sm9:B, 1sm9:C, 1sm9:D, 1ye4:A, 1ye4:B, 1ye4:C, 1ye4:D, 1ye6:A, 1ye6:B, 1ye6:C, 1ye6:D, 1z9a:A, 1z9a:B, 1z9a:C, 1z9a:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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