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BioLiP
>protein
MMIRVAIGGPRGKMGQEAVHTVMNNENMELVAVLDHKDIGDLLSESPNFPASYEVPVFLNLESLIVTIKPDVFLDLTTPH
QVFEHTMLCLQNNVRPVIGTTGFTDEQLQQCTILAEVNKLGCIVAPNFAIGAVLMMKFASLAAAYFPDVEIIEMHHDQKL
DAPSGTAYKTAQMIAEVRPSHKQGHPNEKETLEGARGASYDGIPIHSVRLPGLIAHQQILFGGEGQLFTLRHDSYNRQSF
MSGVTFSINQVMEIKELVYGLENIL

The query sequence (length=265) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5z2e:A 265 265 1.0000 1.0000 1.0000 0.0 5z2f:A
2 5wol:A 230 263 0.4566 0.5261 0.4601 1.19e-73
3 5eer:A 247 266 0.4151 0.4453 0.4135 1.49e-63 5ees:A
4 1yl5:A 247 265 0.4075 0.4372 0.4075 2.03e-62 1c3v:A, 1c3v:B, 1p9l:A, 1p9l:B, 5tjy:A, 5tjz:A, 5ugv:A, 5ugv:B, 1yl5:B, 1yl6:A, 1yl6:B, 1yl7:A, 1yl7:B, 1yl7:C, 1yl7:D, 1yl7:E, 1yl7:F, 1yl7:G, 1yl7:H
5 5tej:A 269 275 0.2943 0.2900 0.2836 1.85e-27 5tej:B, 5tej:C, 5tej:D, 5tem:C, 5tem:A, 5ten:A, 5ten:B, 5ten:C, 5ten:D, 5ten:E, 5ten:F, 5ten:G, 5ten:H, 5us6:A, 5us6:B, 5us6:C, 5us6:E, 5us6:F, 5us6:G, 5us6:I, 5us6:J, 5us6:K
6 1dih:A 272 274 0.2906 0.2831 0.2810 6.18e-27 1arz:A, 1arz:B, 1arz:C, 1arz:D, 1dru:A, 1drv:A, 1drw:A
7 4ywj:A 268 273 0.2943 0.2910 0.2857 8.89e-25 4ywj:B
8 1vm6:B 218 244 0.2679 0.3257 0.2910 4.21e-19 1vm6:A, 1vm6:C, 1vm6:D
9 3ijp:B 267 254 0.2566 0.2547 0.2677 1.33e-17 3ijp:A
10 5u5n:A 279 110 0.1132 0.1075 0.2727 0.49 5u5i:A, 5u5i:B, 5u5n:B
11 1j5p:A 235 111 0.1019 0.1149 0.2432 0.67 1h2h:A
12 4jzb:A 362 67 0.0642 0.0470 0.2537 2.2 4jzb:B, 4jzx:A, 4jzx:B, 4k10:A, 4k10:B, 4k10:D, 4k10:C, 6vjc:A, 6vjc:B, 6w7i:A, 6w7i:B, 6ww1:A, 6ww1:B
13 7ad7:B 635 106 0.0943 0.0394 0.2358 3.2
14 6dft:F 321 123 0.0943 0.0779 0.2033 4.7 6dft:B, 6dft:D, 6dft:H, 6dft:J, 6dft:L
15 6aef:B 458 75 0.0755 0.0437 0.2667 6.2 6aef:A
16 1nov:C 324 52 0.0604 0.0494 0.3077 7.5 1nov:A, 1nov:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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