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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MMDYLITQNGGMVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQLLPGTQGLYGFVIAFLIFINL
GSDMSVVQGLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEHATKGIIFAAMVETYAILGFVISFLLVLNA

The query sequence (length=156) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3aou:A 156 156 1.0000 1.0000 1.0000 4.93e-106 3aou:B, 3aou:C, 3aou:D, 3aou:E, 3aou:F, 3aou:G, 3aou:H, 3aou:I, 3aou:J, 2bl2:A, 2bl2:B, 2bl2:C, 2bl2:D, 2bl2:E, 2bl2:F, 2bl2:G, 2bl2:H, 2bl2:I, 2bl2:J, 2db4:A, 2db4:B, 2db4:C, 2db4:D, 2db4:E, 2db4:F, 2db4:G, 2db4:H, 2db4:I, 2db4:J
2 7khr:o 151 139 0.2692 0.2781 0.3022 7.65e-14 9b8o:h, 9b8o:i, 9b8o:j, 9b8o:k, 9b8o:l, 9b8o:n, 9b8o:m, 9b8o:o, 9brd:h, 9brd:i, 9brd:j, 9brd:k, 9brd:m, 9brd:l, 9brd:n, 9brd:o, 7khr:c, 7khr:k, 7khr:l, 7khr:m, 7khr:p, 6wlw:7, 6wlw:3, 6wlw:4, 6wm2:3
3 7tao:E 159 139 0.2372 0.2327 0.2662 5.63e-11 7tao:F, 7tao:G, 7tao:H, 7tao:I, 7tao:J, 7tao:K, 7tao:L, 7tap:E, 7tap:F, 7tap:G, 7tap:H, 7tap:I, 7tap:J, 7tap:K
4 7tao:D 158 141 0.2500 0.2468 0.2766 2.08e-08 7tap:D
5 6wlw:0 204 159 0.2051 0.1569 0.2013 0.74 6wm2:0
6 2gcg:A 324 88 0.1474 0.0710 0.2614 5.6 2gcg:B, 2gcg:C, 2gcg:D
7 7mtq:B 744 20 0.0705 0.0148 0.5500 8.1 8jd4:2
8 8eyk:E 966 40 0.1026 0.0166 0.4000 9.4 8eyi:E, 8gkc:A, 8gkc:D
9 7wew:A 481 46 0.1026 0.0333 0.3478 9.5
10 4lma:A 318 31 0.0962 0.0472 0.4839 9.7 4lma:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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