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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MLYKIEDVPPWYLCILLGFQHYLTCFSGTIAVPFLLAEALCVGHDQHMVSQLIGTIFTCVGITTLIQTTVGIRLPLFQAS
AFAFLVPAKAILALERWKCPPEEEIYGNWSLPLNTSHIWHPRIREVQGAIMVSSVVEVVIGLLGLPGALLNYIGPLTVTP
TVSLIGLSVFQAAGDRAGSHWGISACSILLIILFSQYLRNLTFLIQIFKMFPIMLAIMTVWLLCYVLTLTDVLPTDPKAY
GFQARTDARGDIMAIAPWIRIPYPCQWGLPTVTAAAVLGMFSATLAGIIESIGDYYACARLAGAPPPPVHAINRGIFTEG
ICCIIAGLLGTGNGSTSSSPNIGVLGITKVGSRRVVQYGAAIMLVLGTIGKFTALFASLPDPILGGMFCTLFGMITAVGL
SNLQFVDMNSSRNLFVLGFSMFFGLTLPNYLESNPGAINTGILEVDQILIVLLTTEMFVGGCLAFILDNTVPGSPEERGL
IQWLKSYDFPIGMGIVKRITFLKYIPICPVFK

The query sequence (length=512) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8jez:A 513 513 1.0000 0.9981 0.9981 0.0 8jew:A, 8jf1:A, 7ytw:A, 7ytw:B
2 8omz:A 410 153 0.0859 0.1073 0.2876 8.61e-10 8omz:C, 8oo1:A, 8oo1:C, 3qe7:A, 5xls:A
3 8omz:A 410 93 0.0488 0.0610 0.2688 8.8 8omz:C, 8oo1:A, 8oo1:C, 3qe7:A, 5xls:A
4 5i6c:A 480 167 0.0820 0.0875 0.2515 0.002 5i6c:B
5 7bj9:B 230 106 0.0625 0.1391 0.3019 1.3 7bj9:A, 5ew0:A, 5ew0:B, 8hxn:A, 3q6v:A, 3q6v:B, 3sd9:A, 3sd9:B
6 5twt:A 291 93 0.0469 0.0825 0.2581 4.6
7 8kdb:A 2117 64 0.0449 0.0109 0.3594 6.1 8kdc:A
8 2zxi:B 606 45 0.0293 0.0248 0.3333 8.5 2zxh:A, 2zxh:B, 2zxi:A, 2zxi:C, 2zxi:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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