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BioLiP
>protein
MLVKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALH
LDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIVLVNPKEAEQFVKESQVDY
LAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINK
VNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSANKI

The query sequence (length=296) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3n9s:A 307 307 1.0000 0.9642 0.9642 0.0 3c4u:A, 3c4u:B, 3c52:A, 3c52:B, 3c56:A, 3c56:B, 3n9r:A, 3n9r:B, 3n9r:K, 3n9r:P, 3n9r:U, 3n9r:Z, 3n9r:e, 3n9r:j, 3n9s:B, 5uck:A, 5uck:B, 5ucn:A, 5ucn:B, 5ucp:A, 5ucp:B, 5ucs:A, 5ucs:B, 5ucz:A, 5ucz:B, 5ud0:B, 5ud2:A, 5ud2:B, 5ud3:A, 5ud3:B, 5ud4:A, 5ud4:B, 5vjf:A, 5vjf:B
2 5ud0:A 282 296 0.9527 1.0000 0.9527 0.0 5ud1:A, 5ud1:B
3 1rv8:B 305 306 0.5034 0.4885 0.4869 1.41e-98 1rv8:A, 1rv8:C, 1rv8:D, 1rvg:A, 1rvg:B, 1rvg:C, 1rvg:D
4 3gay:A 319 295 0.4257 0.3950 0.4271 2.83e-79 3gak:B, 3gay:B, 3gb6:A, 3gb6:B, 2isv:B, 2isw:A, 3ohi:A, 3ohi:B
5 4to8:A 279 303 0.4426 0.4695 0.4323 4.83e-75 4to8:B
6 2isv:A 298 288 0.3986 0.3960 0.4097 5.01e-73 3gak:A
7 3q94:A 285 305 0.4223 0.4386 0.4098 1.85e-72 3q94:B
8 1gvf:B 275 298 0.3682 0.3964 0.3658 1.21e-61 1gvf:A
9 8q5a:A 276 299 0.3514 0.3768 0.3478 5.89e-56 8q58:A
10 8q59:A 280 299 0.3547 0.3750 0.3512 5.93e-56 8q57:A, 8q57:B, 8q59:B
11 6ofu:B 264 279 0.3142 0.3523 0.3333 5.01e-37 6ofu:A, 6ofu:C, 6ofu:D
12 3pm6:A 287 306 0.2973 0.3066 0.2876 3.40e-29
13 3pm6:B 264 297 0.2804 0.3144 0.2795 5.45e-25
14 3qm3:A 350 287 0.2736 0.2314 0.2822 2.50e-14 3qm3:B, 3qm3:C, 3qm3:D, 3qm3:E, 3qm3:F, 3qm3:G, 3qm3:H
15 1dos:A 358 293 0.2297 0.1899 0.2321 1.05e-09 1b57:A, 1b57:B, 1dos:B, 5vjd:A, 5vjd:B, 5vje:A, 5vje:B, 1zen:A
16 5gk5:C 335 275 0.2196 0.1940 0.2364 1.42e-09 5gk3:A, 5gk3:B, 5gk4:A, 5gk4:B, 5gk5:A, 5gk5:B, 5gk5:D, 5gk5:E, 5gk5:F, 5gk5:G, 5gk5:H, 5gk6:A, 5gk6:B, 5gk7:A, 5gk7:B, 5gk8:A, 5gk8:B, 1gyn:A
17 7v6g:B 338 311 0.2500 0.2189 0.2379 3.96e-09 6lnk:A, 6lnk:B, 7v6f:A, 7v6f:B, 7v6g:A, 7yva:A, 7yva:B
18 7rgn:A 340 336 0.2534 0.2206 0.2232 3.51e-08
19 4del:A 345 342 0.2838 0.2435 0.2456 7.96e-07 4a22:A, 4a22:B, 4def:A, 3ekl:A, 3ekz:A, 3elf:A
20 4lv4:A 320 336 0.2669 0.2469 0.2351 1.03e-05
21 1ldc:B 382 82 0.0676 0.0524 0.2439 0.18
22 1kbi:A 504 169 0.1385 0.0813 0.2426 0.27 1fcb:A, 1fcb:B, 1kbi:B, 1kbj:A, 1kbj:B, 3ks0:A, 3ks0:B, 1lco:A, 1lco:B, 1ldc:A, 1ltd:A, 1ltd:B, 2oz0:A, 2oz0:B, 1qcw:A, 1qcw:B, 1sze:A, 1sze:B, 1szf:A, 1szf:B, 1szg:A, 1szg:B
23 5hpz:A 175 43 0.0507 0.0857 0.3488 0.81 5hpz:B, 6s2z:A
24 2zy2:A 521 65 0.0574 0.0326 0.2615 1.6
25 5fq9:B 247 95 0.0878 0.1053 0.2737 2.1 1fof:A, 1fof:B, 5fq9:A, 1h5x:A, 1h5x:B, 1h8y:A, 1h8y:B, 2hp5:A, 2hp5:B, 2hp5:C, 2hp5:D, 1k54:A, 1k54:B, 1k6r:A, 1k6r:B, 1k6s:A, 1k6s:B, 7l5t:A, 7l5t:B, 3lce:A, 3lce:B, 5mmy:B, 5mnu:A, 5mnu:B, 5mox:A, 5mox:B, 5moz:A, 5moz:B, 6rtn:A, 6rtn:B, 4s2o:A, 4s2o:B, 6skp:A, 6skp:B, 6skq:A, 6skq:B, 6skq:C, 6skq:D, 6skr:A, 6skr:B, 2wgi:A, 2wgi:B, 2wgv:A, 2wgv:B, 2wkh:A, 2wkh:B, 4wz5:A, 4wz5:B, 6zrg:A, 6zrh:A, 6zrh:B, 6zrh:C, 6zrh:D, 6zri:A, 6zri:B, 6zri:C, 6zri:D, 6zw2:A
26 8jh1:B 462 37 0.0507 0.0325 0.4054 2.9 8jbb:A, 8jbb:B, 8jh1:A
27 3puj:B 534 67 0.0676 0.0375 0.2985 3.1 3puj:A
28 4w8j:A 1017 45 0.0507 0.0147 0.3333 3.6 4arx:A, 4arx:D, 4arx:B, 4arx:C, 4ary:A, 4ary:B, 4ary:C, 4ary:D
29 7xsj:A 561 67 0.0676 0.0357 0.2985 3.9
30 7xbl:B 136 48 0.0574 0.1250 0.3542 3.9 2gal:A, 2gal:B, 3gal:A, 3gal:B, 4gal:B, 5gal:B, 5h9q:B, 5h9s:B, 7n57:A, 7n57:B, 7n8d:A, 7n8d:B, 7rdg:C, 7rdg:B, 7rdg:A, 7rdg:D, 7tkx:A, 7tkx:B, 7tkz:B, 7tkz:A, 7tro:B, 4uw3:A, 4uw4:B, 4uw5:A, 4uw5:D, 4uw5:F, 4uw6:B, 6vto:A, 6vto:B, 6vtq:A, 6vtq:B, 6vts:A, 6vts:B, 7xac:A, 7xac:B, 4xbq:A, 4xbq:B, 7xbl:A, 4y26:A, 4y26:B, 3zxe:A, 3zxe:B
31 7w9h:B 122 96 0.0845 0.2049 0.2604 4.7 7w9h:A
32 4ao9:A 433 131 0.0946 0.0647 0.2137 5.6 4ao9:B, 4aoa:A, 4aoa:B
33 4utu:A 229 38 0.0439 0.0568 0.3421 5.7 4utu:B, 4utw:A, 4utw:B, 4utw:C, 4utw:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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