Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MLVINGTPRKHGRTRIAASYIAALYHTDLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPEYHSGMSGAL
KNALDFLSSEQFKYKPVALLAVAGGGKGGINALNNMRTVMRGVYANVIPKQLVLDPVHIDVENATVAENIKESIKELVEE
LSMFAKAG

The query sequence (length=168) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3gfr:D 172 168 0.9940 0.9709 0.9940 2.03e-120 3gfq:A, 3gfq:B, 3gfq:C, 3gfq:D, 3gfr:A, 3gfr:B, 3gfr:C, 3gfs:A, 3gfs:B, 3gfs:C, 3gfs:D, 3gfs:E, 3gfs:F, 3gfs:G, 3gfs:H, 3gfs:I, 3gfs:J, 3gfs:K, 3gfs:L, 2gsw:A, 2gsw:B, 2gsw:C, 2gsw:D, 1nni:1
2 7bx9:A 168 165 0.6905 0.6905 0.7030 1.70e-76
3 7f76:B 173 166 0.6250 0.6069 0.6325 8.61e-73 7f76:A
4 4h6p:A 184 69 0.1607 0.1467 0.3913 2.84e-09 4h6p:B, 4h6p:C, 4h6p:D, 4h6p:E, 4h6p:F, 4h6p:G, 4h6p:L, 4h6p:H, 4h6p:I, 4h6p:J, 4h6p:K, 4hs4:B, 4hs4:C, 4hs4:D, 4hs4:G, 4hs4:H, 3s2y:A, 3s2y:B, 3s2y:C, 3s2y:D
5 1t0i:A 185 110 0.2083 0.1892 0.3182 3.00e-09 1t0i:B
6 3svl:B 182 136 0.2083 0.1923 0.2574 1.78e-08 3svl:A
7 1x77:A 174 81 0.1607 0.1552 0.3333 1.93e-08 1x77:B
8 3u7r:A 182 73 0.1310 0.1209 0.3014 3.95e-06 3u7r:B
9 4f8y:A 196 108 0.1905 0.1633 0.2963 1.94e-04 4f8y:B, 4f8y:C, 4f8y:D, 3lcm:A, 3lcm:B, 3lcm:C, 3lcm:D
10 4pty:A 174 85 0.1488 0.1437 0.2941 0.010 6dqo:A, 4pty:B, 4ptz:C, 4ptz:A, 4ptz:B, 4ptz:D, 4pu0:C, 4pu0:A, 4pu0:D
11 8ok9:A 430 67 0.1131 0.0442 0.2836 1.2 2bgg:A, 8pvv:A, 8qg0:A, 6t5t:A, 6tuo:A, 2w42:A, 6xu0:A, 6xu0:B, 6xup:A, 6xup:B, 1ytu:A, 1ytu:B
12 2bgg:B 394 67 0.1131 0.0482 0.2836 1.4 2w42:B
13 1rxv:A 305 64 0.0952 0.0525 0.2500 1.6 1rxv:B, 1rxw:A
14 1t5b:A 199 102 0.1667 0.1407 0.2745 1.7 1t5b:B
15 7x5j:C 256 78 0.1429 0.0938 0.3077 1.9 7x5j:D, 7x5j:A, 7x5j:E, 7x5j:B, 7x5j:F
16 7n2x:A 201 80 0.1310 0.1095 0.2750 2.2 2d5i:A, 1v4b:A, 2z98:A, 2z9b:A, 2z9c:A, 2z9d:A, 2z9d:B
17 7v6d:A 367 66 0.1190 0.0545 0.3030 2.3 7v6d:B
18 2zxp:A 648 65 0.1310 0.0340 0.3385 3.5 1ir6:A
19 5n4b:A 722 71 0.1131 0.0263 0.2676 3.6 5n4b:B, 5n4d:A, 5n4d:B
20 2zxr:A 616 65 0.1310 0.0357 0.3385 3.8
21 7awv:A 210 53 0.1071 0.0857 0.3396 4.7 7awv:B
22 8fjl:D 1138 84 0.1190 0.0176 0.2381 6.9 8fjk:E, 8fjk:G, 8fjk:I, 8fjk:K, 8fjl:E, 8fjl:G, 8fjl:I, 8fjl:K, 6m99:C
23 4ese:A 193 80 0.1250 0.1088 0.2625 7.5

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218