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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MLVINGTPRKHGRTRIAASYIAALYHTDLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPEYHSGMSGAL
KNALDFLSSEQFKYKPVALLAVAGGGDGGINALNNMRTVMRGVYANVIPKQLVLKPVHIDVENATVAENIKESIKELVEE
LSMFAK

The query sequence (length=166) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3gfr:D 172 166 0.9880 0.9535 0.9880 3.63e-118 3gfq:A, 3gfq:B, 3gfq:C, 3gfq:D, 3gfr:A, 3gfr:B, 3gfr:C, 3gfs:A, 3gfs:B, 3gfs:C, 3gfs:D, 3gfs:E, 3gfs:F, 3gfs:G, 3gfs:H, 3gfs:I, 3gfs:J, 3gfs:K, 3gfs:L, 2gsw:A, 2gsw:B, 2gsw:C, 2gsw:D, 1nni:1
2 7bx9:A 168 165 0.6867 0.6786 0.6909 2.68e-75
3 7f76:B 173 166 0.6205 0.5954 0.6205 6.49e-71 7f76:A
4 4h6p:A 184 69 0.1627 0.1467 0.3913 3.24e-09 4h6p:B, 4h6p:C, 4h6p:D, 4h6p:E, 4h6p:F, 4h6p:G, 4h6p:L, 4h6p:H, 4h6p:I, 4h6p:J, 4h6p:K, 4hs4:B, 4hs4:C, 4hs4:D, 4hs4:G, 4hs4:H, 3s2y:A, 3s2y:B, 3s2y:C, 3s2y:D
5 1t0i:A 185 110 0.2108 0.1892 0.3182 3.78e-09 1t0i:B
6 3svl:B 182 136 0.2108 0.1923 0.2574 1.93e-08 3svl:A
7 1x77:A 174 81 0.1627 0.1552 0.3333 2.44e-08 1x77:B
8 3u7r:A 182 73 0.1325 0.1209 0.3014 3.97e-06 3u7r:B
9 4f8y:A 196 108 0.1988 0.1684 0.3056 2.66e-05 4f8y:B, 4f8y:C, 4f8y:D, 3lcm:A, 3lcm:B, 3lcm:C, 3lcm:D
10 4pty:A 174 53 0.1024 0.0977 0.3208 0.016 6dqo:A, 4pty:B, 4ptz:C, 4ptz:A, 4ptz:B, 4ptz:D, 4pu0:C, 4pu0:A, 4pu0:D
11 8ok9:A 430 67 0.1145 0.0442 0.2836 1.3 2bgg:A, 8pvv:A, 8qg0:A, 6t5t:A, 6tuo:A, 2w42:A, 6xu0:A, 6xu0:B, 6xup:A, 6xup:B, 1ytu:A, 1ytu:B
12 7x5j:C 256 80 0.1506 0.0977 0.3125 1.4 7x5j:D, 7x5j:A, 7x5j:E, 7x5j:B, 7x5j:F
13 1rxv:A 305 64 0.0964 0.0525 0.2500 1.5 1rxv:B, 1rxw:A
14 2bgg:B 394 67 0.1145 0.0482 0.2836 1.5 2w42:B
15 7n2x:A 201 80 0.1325 0.1095 0.2750 2.3 2d5i:A, 1v4b:A, 2z98:A, 2z9b:A, 2z9c:A, 2z9d:A, 2z9d:B
16 1t5b:A 199 77 0.1145 0.0955 0.2468 3.1 1t5b:B
17 7awv:A 210 53 0.1084 0.0857 0.3396 5.1 7awv:B
18 5n4b:A 722 66 0.1024 0.0235 0.2576 5.3 5n4b:B, 5n4d:A, 5n4d:B
19 4ese:A 193 80 0.1265 0.1088 0.2625 8.6
20 9exw:A 148 92 0.1566 0.1757 0.2826 9.9 9exw:B, 9exx:A, 9exx:B, 9exy:A, 7lmt:A, 7lmt:H, 7lmt:B, 7lmt:C, 7lmt:D, 7lmt:E, 7lmt:F, 7lmt:G, 7mdn:A, 7mdn:H, 7mdn:B, 7mdn:C, 7mdn:D, 7mdn:E, 7mdn:F, 7mdn:G, 6ue6:A, 6ue6:B, 6ue6:D, 6ue6:E, 6ue6:G, 6ue6:H, 5vc8:A, 7vln:B, 6xcg:A, 6xcg:B, 6xcg:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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