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BioLiP
>protein
MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEHEKMVRGIDEFLQREMDVAVEAASQQAVKDYAEKILKAGIDLIVL
STGAFADRDFLSRVREVCRKTGRRVYIASGAIGGLDAIFSASELIEEIVLTTRKNWRQFGRKGVIFEGSASEAAQKFPKN
LNVAATLSIASGKDVKVRLVADEVEENIHEILVRGEFGEMEIRVRNRPMRENPKTSYLAALSVTRILRNLKEGLVV

The query sequence (length=236) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2dc1:A 236 236 1.0000 1.0000 1.0000 4.02e-171 2dc1:B
2 1j5p:A 235 243 0.3771 0.3787 0.3663 1.28e-37 1h2h:A
3 8hp3:A 298 192 0.2331 0.1846 0.2865 7.62e-08 8hp3:B, 8hp3:C
4 3wbb:A 297 244 0.2458 0.1953 0.2377 0.021 3wbb:B, 3wbb:C, 3wbf:A, 3wbf:B, 3wbf:C
5 8i7h:A 297 122 0.1314 0.1044 0.2541 0.028 8i7h:B, 8i7h:C, 8i7h:D
6 5t9f:B 253 65 0.0720 0.0672 0.2615 0.26 5t95:A, 5t95:B, 5t9e:A, 5t9e:B, 5t9f:A, 5whx:A, 5whx:B
7 1cer:O 331 101 0.1271 0.0906 0.2970 1.00 1cer:P, 1cer:Q, 1cer:R, 1cer:A, 1cer:B, 1cer:C, 1cer:D, 2g82:O, 2g82:P, 2g82:Q, 2g82:R, 2g82:A, 2g82:B, 2g82:C, 2g82:D, 1vc2:A
8 3wgy:B 324 167 0.1610 0.1173 0.2275 1.0 3wgq:A, 3wgz:B
9 1v9l:A 418 32 0.0508 0.0287 0.3750 1.1 1v9l:B, 1v9l:C, 1v9l:D, 1v9l:E, 1v9l:F
10 4zm6:A 844 63 0.0975 0.0273 0.3651 1.2 4zm6:B
11 8z99:H 582 62 0.0805 0.0326 0.3065 2.3 8yhd:I, 8yhd:L, 8yhe:I, 8yhe:L, 8z4j:H, 8z4j:I, 8z4j:L, 8z4l:H, 8z4l:I, 8z4l:L, 8z99:I, 8z99:L, 8z9c:H, 8z9c:I, 8z9c:L, 8z9e:I, 8z9e:L
12 7byi:A 463 123 0.1483 0.0756 0.2846 2.4 8aql:A, 8aql:B, 8aql:C, 8aql:D, 9box:A, 9box:C, 9box:B, 9box:D, 7byi:B, 8fjt:A, 8fjt:B, 8fju:A, 8fju:B, 8gks:A, 8gks:B, 8gkt:A, 8gkt:B, 8gku:A, 8gku:B, 8gkw:A, 8gkw:B, 8gky:A, 8gky:B, 8gkz:A, 8gkz:B, 6m5o:A, 6m5o:B, 6qvg:A, 6qvg:B, 6qvl:A, 6qvl:B, 8t4o:A, 8t4o:B, 8t4p:A, 8t4p:B, 8tlc:A, 8tlc:B, 5v7i:A, 5v7i:B
13 6ttb:A 331 119 0.1271 0.0906 0.2521 3.0
14 1nbo:O 337 103 0.1186 0.0831 0.2718 4.3 1jn0:O, 1jn0:A, 1jn0:B, 1nbo:A, 1nbo:B, 2pkq:P, 2pkq:R, 2pkq:S, 2pkr:O, 2pkr:R, 2pkr:P, 2pkr:Q, 2pkr:A, 2pkr:B, 2pkr:C, 2pkr:D, 2pkr:H, 2pkr:I, 2pkr:L, 2pkr:M, 7q53:P, 7q53:R, 7q54:R, 7q54:P, 7q54:B, 7q54:D, 7q55:P, 7q55:R, 7q55:B, 7q55:D, 7q55:F, 7q55:H, 7q55:J, 7q55:L, 7q56:J, 7q56:L, 7q56:B, 7q56:D, 7q56:R, 7q56:P, 7q56:H, 7q56:F, 7q57:P, 7q57:R, 7q57:B, 7q57:D, 7q57:H, 7q57:F, 7q57:J, 7q57:L, 7q57:N, 7q57:T, 1rm3:O, 1rm3:A, 1rm3:B, 1rm4:O, 1rm4:A, 1rm4:B, 1rm5:O, 1rm5:A, 1rm5:B
15 8evw:B 326 148 0.1568 0.1135 0.2500 4.5 8evw:A, 8evx:A
16 6qun:O 334 107 0.1271 0.0898 0.2804 5.0 6qun:R, 6quq:O, 6quq:R, 4z0h:O, 4z0h:R
17 2pyj:B 572 17 0.0424 0.0175 0.5882 5.9 2py5:A, 2py5:B, 2pyj:A, 2pyl:A, 2pzs:A, 2pzs:B, 2pzs:C, 2pzs:D, 1xhz:A, 1xhz:B, 1xhz:C, 1xhz:D, 1xi1:A, 1xi1:B
18 1sla:A 134 28 0.0508 0.0896 0.4286 6.1 1slb:A, 1slb:C, 1slc:A, 1slc:B, 1slt:A, 1slt:B
19 2b3x:A 888 92 0.1102 0.0293 0.2826 6.3 2b3y:A, 2b3y:B
20 2ep7:B 339 106 0.1356 0.0944 0.3019 6.6 2ep7:A
21 6ghr:B 342 109 0.1271 0.0877 0.2752 6.6 4boy:A, 4boy:B, 6gfo:A, 6gfo:B, 6gfo:C, 6gfo:D, 6gfp:A, 6gfp:B, 6gfq:B, 6gfq:A, 6gfr:A, 6gfr:B, 6gg7:B, 6gg7:A, 6ghl:A, 6ghl:D, 6ghl:B, 6ghl:C, 6ghr:D, 6ghr:A, 6ghr:C, 6gve:D, 6gve:A, 6gve:E, 6gve:F, 6gve:I, 6gve:K, 6gve:N, 6gve:O, 3zcx:A, 3zcx:B, 3zdf:B, 3zdf:A
22 6smn:D 480 77 0.1059 0.0521 0.3247 6.9 6smn:A, 6smn:B, 6smn:C, 6smw:A, 6smw:B, 6smw:C, 6smw:D
23 5upy:A 350 45 0.0593 0.0400 0.3111 7.2
24 7q2d:A 286 56 0.0636 0.0524 0.2679 7.6 2fk8:A, 3ha3:A, 3ha5:A, 3ha7:A, 7q2b:A, 7q2c:A, 7q2e:A, 7q2f:A, 7q2g:A, 7q2h:A
25 4fxq:A 445 93 0.0890 0.0472 0.2258 7.8 4fk7:A, 4fxq:B
26 5upx:A 380 45 0.0593 0.0368 0.3111 7.9
27 5k8o:B 425 16 0.0381 0.0212 0.5625 9.1 5k8n:A, 5k8n:G, 5k8n:B, 5k8n:D, 5k8n:C, 5k8n:H, 5k8n:E, 5k8n:F, 5k8o:A, 5k8o:H, 5k8o:E, 5k8o:C, 5k8o:D, 5k8o:F, 5k8o:G, 5k8p:A, 5k8p:B, 5k8p:C, 5k8p:F, 5k8p:D, 5k8p:E, 5k8p:G, 5k8p:H
28 3k2b:A 337 103 0.1186 0.0831 0.2718 10.0 3k2b:B, 3k2b:C, 3k2b:D, 3k2b:E, 3k2b:F, 3k2b:G, 3k2b:H, 3k2b:O, 3k2b:Q, 6kez:A, 6kez:B, 6kez:C, 6kez:D, 6kez:E, 6kez:F, 6kez:G, 6kez:H, 3qv1:A, 3qv1:D, 3qv1:B, 3qv1:C, 3qv1:F, 3qv1:E, 3rvd:A, 3rvd:D, 3rvd:B, 3rvd:C, 3rvd:O, 3rvd:Q, 3rvd:F, 3rvd:G, 3rvd:E, 3rvd:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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