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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MLVFIDDGSTNIKLQWQESDGTIKQHISPNSFKREWAVSFGDKKVFNYTLNGEQYSFDPISPDTNIAWQYSDVNVVAVHH
ALLTSGLPVSEVDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELDELD
SLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGSSYLADDIIIHRKDNNYLKQRINDENK
ISIVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAELICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIGN

The query sequence (length=316) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4a62:A 320 320 0.9968 0.9844 0.9844 0.0 4a61:A, 4a62:B, 4a6j:A, 4a6j:B, 4a6j:C, 4a6j:D, 4a6j:E, 4a6j:F, 4a6j:G, 4a6j:H, 4a6j:I, 4a6j:J, 5aey:A, 5aey:B, 5aey:C, 5aey:D, 5aey:E, 1mwm:A, 1mwm:B, 2zgy:A, 2zgy:B, 2zgz:A, 2zgz:B, 2zhc:A
2 6oid:A 289 150 0.1203 0.1315 0.2533 0.12 6oid:B
3 7z7s:H 322 96 0.0728 0.0714 0.2396 4.7 7p61:H, 7p7c:H, 7p7l:H, 7p7m:H, 7z80:H
4 5hh9:A 390 62 0.0633 0.0513 0.3226 6.0 5hh9:B, 5i90:A, 5i90:B
5 3hwo:A 379 42 0.0443 0.0369 0.3333 7.1 3hwo:B, 5jxz:A, 5jxz:B, 5jy4:A, 5jy4:B, 5jy8:A, 5jy8:B, 5jzd:A, 5jzd:B
6 3etn:B 198 97 0.0886 0.1414 0.2887 8.0 3etn:A, 3etn:C, 3etn:D
7 2c03:B 297 113 0.0854 0.0909 0.2389 9.8 2c03:A, 2cnw:A, 2cnw:B, 2cnw:C, 2j7p:A, 2j7p:B, 1jpj:A, 1jpn:B, 1jpn:A, 1ls1:A, 1ng1:A, 2ng1:A, 1o87:A, 1o87:B, 1okk:A
8 4x0o:E 360 25 0.0316 0.0278 0.4000 9.9 5kp2:B, 5v0p:A, 5v0p:B, 4x0o:A, 4x0o:B, 4x0o:D, 4x0o:F, 4x0o:G, 4x0o:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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