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BioLiP
>protein
MLVAYDSMTGNVKRFIHKLNMPAVQIDEDLVIDEDFILITYTTGFGNVPERVLDFLERNNEKLKGVSASGNRNWGDMFGA
SADKISTKYEVPIVSKFELSGTNNDVEYFKERVREIA

The query sequence (length=117) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4bmo:B 118 117 1.0000 0.9915 1.0000 3.85e-84 4bmp:B, 2x2o:A, 2x2p:A, 2xod:A, 2xoe:A, 7z3d:B, 7z3e:B
2 1rlj:A 135 115 0.4872 0.4222 0.4957 9.44e-36
3 3n3a:C 131 125 0.4444 0.3969 0.4160 1.73e-24 3n39:C, 3n39:D, 3n3a:D, 3n3b:C, 3n3b:D
4 7mmq:G 124 113 0.3590 0.3387 0.3717 2.92e-19
5 7mmp:E 139 125 0.3846 0.3237 0.3600 1.63e-18 6ebq:A, 6ebq:B, 7mmp:G, 7mmp:F, 7mmp:H, 7mmq:E, 7mmq:F, 7mmq:H, 7mmr:E, 7mmr:G, 7mmr:F, 7mmr:H, 7mms:E, 7mms:G, 7mms:F, 7mms:H
6 4n82:B 153 136 0.3248 0.2484 0.2794 7.27e-07 4n82:A
7 5lji:A 145 140 0.3504 0.2828 0.2929 2.52e-04 5lji:C
8 5veg:B 149 99 0.2222 0.1745 0.2626 0.056 5veg:A, 5veg:C
9 6gaq:A 146 85 0.1795 0.1438 0.2471 0.46 6gaq:B
10 3d6y:A 277 104 0.2650 0.1119 0.2981 0.84 1bow:A, 7ckq:G, 7ckq:I, 3d6z:A, 3d70:A, 3d71:A, 1exi:A, 1exj:A, 3q1m:A, 3q2y:A, 3q3d:A, 3q5p:A, 3q5r:A, 3q5s:A, 1r8e:A
11 1r0l:B 379 43 0.1026 0.0317 0.2791 0.97 1r0l:A, 1r0l:C, 1r0l:D
12 6ldk:A 813 82 0.1880 0.0271 0.2683 4.4
13 6rm3:LDD 102 47 0.1197 0.1373 0.2979 7.2
14 8tjc:B 336 25 0.0855 0.0298 0.4000 8.3 7jhi:A, 7jhi:C, 7jhl:A, 7jhl:B, 7jhm:A, 7jhm:B, 7jhn:A, 7jho:A, 7jho:B, 8sz3:A, 8sz3:B, 8tic:A, 8tic:B, 8tic:C, 8tic:D, 8tjc:A, 8tjc:C, 8tjc:D, 6wmm:A, 6wmm:B, 6wmn:A, 6wmn:B, 6wmn:C, 6wmn:D, 6wmo:A, 6wmo:B
15 5lhd:C 905 47 0.1111 0.0144 0.2766 8.6 6atk:C, 6atk:A, 6atk:B, 4fyq:A, 4fyr:A, 4fys:A, 4fyt:A, 5lhd:D, 5lhd:A, 5lhd:B, 6u7e:A, 6u7e:B, 6u7f:A, 6u7f:B, 6u7g:A, 6u7g:B, 7vpq:A, 7vpq:C, 7vpq:E
16 7pwe:A 194 80 0.1624 0.0979 0.2375 9.6 7pwe:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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