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BioLiP
>protein
MLTVIAEIRTRPGQHHRQAVLDQFAKIVPTVLKEEGCHGYAPMVDCAAGVSFQSMAPDSIVMIEQWESIAHLEAHLQTPH
MKAYSEAVKGDVLEMNIRILQPG

The query sequence (length=103) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1tuv:A 103 103 1.0000 1.0000 1.0000 2.07e-74
2 3kkf:A 105 31 0.0971 0.0952 0.3226 0.87
3 6s9u:A 520 26 0.0874 0.0173 0.3462 2.2
4 4ka7:A 695 36 0.1165 0.0173 0.3333 5.3 4ka8:A, 4put:A
5 3wdv:A 298 28 0.1068 0.0369 0.3929 8.8 3wdu:A, 3wdu:B, 3wdu:C, 3wdu:D, 3wdv:B, 3wdv:C, 3wdv:D, 3wdx:A, 3wdx:B, 3wdy:A, 3wdy:B, 3wdy:C, 3wdy:D
6 1x8d:A 104 40 0.1359 0.1346 0.3500 9.3 1x8d:B, 1x8d:C, 1x8d:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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