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BioLiP
>protein
MLTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDD
GSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLN
GVMFYDHIDKNHPLQPHTDAVEV

The query sequence (length=183) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1lm4:A 190 183 1.0000 0.9632 1.0000 1.67e-135 6jfg:A, 6jfo:A, 6jfq:A, 6jfr:A, 6jfs:A, 1lm4:B, 1lmh:A, 1lqw:A, 1lqw:B, 1q1y:A, 3u7k:A, 3u7l:A, 3u7m:A, 3u7n:A
2 2okl:A 185 180 0.5847 0.5784 0.5944 2.60e-74 2okl:B
3 1lqy:A 184 183 0.5738 0.5707 0.5738 3.70e-73
4 2os1:A 179 174 0.5246 0.5363 0.5517 5.39e-61
5 2os3:A 205 183 0.5410 0.4829 0.5410 9.52e-61
6 6ow7:P 196 176 0.5137 0.4796 0.5341 5.59e-60 2ai7:A, 2aia:A, 2aie:P, 4eox:P, 1lm6:A, 6ow2:P, 6ow7:Q, 3str:P, 3svj:P, 3sw8:P
7 3cmd:B 188 174 0.5246 0.5106 0.5517 1.72e-59 3cmd:A, 3g6n:A, 3g6n:B
8 5jex:A 203 182 0.5137 0.4631 0.5165 3.41e-58 5jez:A, 5jf0:A, 5jf1:A, 5jf2:A, 5jf3:A, 5jf4:A, 5jf5:A, 5jf6:A, 5jf7:A, 5jf8:A
9 3l87:A 200 179 0.4918 0.4500 0.5028 1.05e-55
10 3uwb:A 149 159 0.3279 0.4027 0.3774 2.28e-21 3uwa:A
11 4wxl:C 165 112 0.2404 0.2667 0.3929 3.29e-20 4wxl:A, 4wxl:B, 4wxl:D
12 1y6h:A 177 170 0.3169 0.3277 0.3412 2.29e-19 1sv2:A, 1sv2:B, 1szz:A, 1szz:B, 1szz:C, 1szz:D, 1szz:E, 1szz:F, 1szz:G, 1szz:H, 1vev:A, 1vev:B, 1vey:A, 1vey:B, 1vez:A, 1vez:B, 1y6h:B
13 3qu1:A 168 123 0.2568 0.2798 0.3821 2.29e-19 3qu1:B
14 3cpm:A 184 111 0.2404 0.2391 0.3964 3.85e-19 3m6o:A, 3m6o:B, 3m6p:A, 3m6p:B, 3m6q:A, 3m6r:A, 3m6r:B, 3m6r:C, 3m6r:D, 3o3j:A, 3pn2:A, 3pn3:A, 3pn3:B, 3pn4:A, 3pn5:A, 3pn6:A, 3pn6:B
15 6jes:A 159 120 0.2514 0.2893 0.3833 4.17e-19 6jes:B, 6jf3:A, 6jf3:B, 6jf4:B, 6jf4:A, 6jf5:B, 6jf5:A, 6jf6:C, 6jf6:A, 6jf6:B, 6jf6:D, 6jf7:A, 6jf7:B, 6jf8:A, 6jf8:B, 6jf8:C, 6jf8:D
16 1jym:A 179 109 0.2404 0.2458 0.4037 4.20e-17 1jym:B, 1jym:C, 1jym:D, 1jym:E, 1jym:F, 1jym:G, 1jym:H, 1jym:I, 1jym:J, 1rl4:A, 1rl4:B, 1rqc:A, 1rqc:B, 1rqc:C, 1rqc:D, 1rqc:E, 1rqc:F, 1rqc:G, 1rqc:H, 1rqc:I, 1rqc:J
17 3oca:A 179 121 0.2350 0.2402 0.3554 1.06e-16 3oca:B, 3u04:A
18 6jex:A 172 111 0.2186 0.2326 0.3604 2.95e-16 6jer:A, 6jer:B, 6jet:A, 6jet:B, 6jeu:A, 6jeu:B, 6jev:A, 6jev:B, 6jew:A, 6jew:B, 6jex:B
19 6ck7:A 172 111 0.2459 0.2616 0.4054 8.34e-16 6ck7:B, 6ck7:C, 6ck7:D
20 1bs4:A 168 114 0.2295 0.2500 0.3684 8.81e-16 2ai8:A, 2ai8:B, 2ai8:C, 4al2:B, 4al3:A, 4az4:A, 1bs4:B, 1bs4:C, 1bs5:A, 1bs5:B, 1bs5:C, 1bs6:A, 1bs6:B, 1bs6:C, 1bs8:A, 1bs8:B, 1bs8:C, 1bsj:A, 1bsk:A, 1bsz:A, 1bsz:B, 1bsz:C, 7d6z:g, 1def:A, 2def:A, 1dff:A, 1g27:A, 1g27:B, 1g27:C, 1g2a:A, 1g2a:B, 1g2a:C, 3k6l:A, 3k6l:B, 2kmn:A, 1lru:A, 1lru:B, 1lru:C, 8ofe:A, 8rhr:A, 2w3t:A, 2w3u:A, 1xem:A, 1xen:A, 1xeo:A
21 5mtc:A 137 156 0.2568 0.3431 0.3013 2.61e-15 5mtc:B, 5mtd:A, 5mtd:B, 5mte:A, 5mte:B
22 1ix1:A 169 111 0.2240 0.2426 0.3694 1.76e-14 1ix1:B, 1lry:A, 1n5n:A, 1n5n:B, 1s17:A, 1s17:B
23 3fwx:A 165 112 0.2131 0.2364 0.3482 2.14e-14 3fwx:B
24 5j46:A 169 112 0.2022 0.2189 0.3304 9.18e-13
25 4dr8:A 188 124 0.2295 0.2234 0.3387 6.24e-12 4dr8:B, 4dr8:C, 4dr8:D, 4dr9:A, 4dr9:B, 4dr9:C, 4dr9:D
26 6jfc:B 161 114 0.2186 0.2484 0.3509 1.34e-11 6jfa:A, 6jfc:A, 6jfd:C, 6jfe:B, 6jff:B, 6jfn:B
27 4je6:A 193 178 0.2732 0.2591 0.2809 1.64e-11 4je6:B, 4je7:A, 4je7:B, 4je8:A, 4je8:B, 1zxz:A, 1zxz:B, 1zy0:A, 1zy0:B, 1zy1:A, 1zy1:B
28 2ew5:A 166 114 0.2131 0.2349 0.3421 5.35e-11 4e9a:A, 4e9b:A, 2ew6:A, 2ew7:A
29 1ws1:A 151 115 0.2295 0.2781 0.3652 5.48e-11
30 3g5k:A 183 129 0.1967 0.1967 0.2791 1.17e-10 3g5k:B, 3g5k:C, 3g5k:D, 3g5p:A, 3g5p:B, 3g5p:C, 3g5p:D
31 5kob:A 171 170 0.2842 0.3041 0.3059 1.96e-09 5kob:B, 5kob:C, 5kob:D, 5vcp:A, 5vcp:B, 5vcp:C, 5vcp:D
32 5hgw:A 174 170 0.2732 0.2874 0.2941 2.75e-06 5hgw:B, 5i2b:A, 5t8z:A
33 5cy7:A 171 178 0.2568 0.2749 0.2640 3.50e-06 5cp0:A, 5cpd:A, 5cvk:A, 5cvp:A, 5cvq:A, 5cwx:A, 5cwy:A, 5cx0:A, 5cxj:A, 5cy8:A, 6ikt:A, 6iky:A, 6il0:A, 6il2:A, 4nt8:A
34 3e3u:A 196 117 0.1803 0.1684 0.2821 4.31e-05
35 9bf5:C 1190 88 0.1475 0.0227 0.3068 0.53 9bf5:D, 9c6q:C
36 8u0w:A 1099 40 0.0874 0.0146 0.4000 0.63
37 8u0u:A 1126 40 0.0874 0.0142 0.4000 0.64 8u0u:F
38 8u3k:A 1150 40 0.0874 0.0139 0.4000 0.67 9ezy:A, 8u3k:F
39 1gpe:B 587 77 0.0984 0.0307 0.2338 1.8 1gpe:A
40 2rld:C 116 30 0.0601 0.0948 0.3667 9.1 2rld:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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