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BioLiP
>protein
MLTLKIFVYTVVTFFVCLFIFGFLSNDPARNPGKN

The query sequence (length=35) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6kac:I 35 35 1.0000 1.0000 1.0000 9.74e-20 8bd3:I, 8bd3:i, 6kac:i, 6kad:I, 6kad:i, 6kaf:i, 6kaf:I, 8kde:I, 7pi0:I, 7pi0:i, 7pi5:I, 7pi5:i, 7pin:I, 7pin:i, 7pin:I1, 7pin:i1, 7piw:I, 7piw:i, 7piw:I1, 7piw:i1, 7pnk:I, 7pnk:i, 8zee:I
2 8c29:I 36 35 0.8000 0.7778 0.8000 1.47e-15 8c29:i, 3jcu:I, 3jcu:i, 5mdx:i, 7oui:I, 7oui:i, 5xnl:I, 5xnl:i, 5xnm:I, 5xnm:i, 6yp7:i
3 7y5e:IL 35 34 0.7143 0.7143 0.7353 1.46e-13 7y5e:I6, 7y5e:i6, 7y5e:iL, 7y7a:I9, 7y7a:i9, 7y7a:IE, 7y7a:iE, 7y7a:IO, 7y7a:iO, 7y7a:IZ, 7y7a:iZ, 7y7a:Im, 7y7a:im
4 6j3y:I 35 35 0.7429 0.7429 0.7429 2.24e-13 6j3y:i, 6j3z:I, 6j3z:i, 6j40:I, 6j40:i, 8j5k:I, 8j5k:i, 6jlu:I, 6jlu:i, 7vd5:I, 7vd5:i
5 4yuu:I2 35 34 0.7143 0.7143 0.7353 8.76e-13 4yuu:I1, 4yuu:i1, 4yuu:i2
6 8tow:I 37 35 0.7143 0.6757 0.7143 1.68e-12 7n8o:I, 7n8o:i, 7rcv:I, 7rcv:i, 8tow:i, 6wj6:I
7 8wb4:I 35 34 0.7143 0.7143 0.7353 3.00e-12 8wb4:i, 8xlp:i, 8xlp:I, 8xr6:i, 8xr6:I
8 8eqm:I 34 32 0.7143 0.7353 0.7812 8.30e-12 8eqm:i
9 8wql:ID 36 34 0.7143 0.6944 0.7353 2.21e-11 8wql:IE, 8wql:I1, 8wql:i1, 8wql:iD, 8wql:iE
10 7ymi:I 34 32 0.4286 0.4412 0.4688 8.57e-05 7ymi:i, 7ymm:1I, 7ymm:2I, 7ymm:3I, 7ymm:4I
11 5b5e:i 38 35 0.7429 0.6842 0.7429 1.54e-04 3a0b:I, 3a0b:i, 3a0h:I, 3a0h:i, 2axt:I, 2axt:i, 5b5e:I, 5b66:I, 5b66:i, 7cji:I, 7cji:i, 7cjj:I, 7cjj:i, 7cou:I, 7cou:i, 7czl:I, 7czl:i, 7d1t:I, 7d1t:i, 7d1u:I, 7d1u:i, 6dhe:I, 6dhe:i, 6dhf:I, 6dhf:i, 6dhg:I, 6dhg:i, 6dhh:I, 6dhh:i, 6dho:I, 6dho:i, 6dhp:I, 6dhp:i, 5e79:I, 5e79:i, 5e7c:I, 5e7c:i, 7eda:I, 9evx:I, 9evx:i, 8ez5:I, 8ez5:i, 8f4c:I, 8f4c:i, 8f4d:I, 8f4d:i, 8f4e:I, 8f4e:i, 8f4f:I, 8f4f:i, 8f4g:I, 8f4g:i, 8f4h:I, 8f4h:i, 8f4i:I, 8f4i:i, 8f4j:I, 8f4j:i, 8f4k:I, 8f4k:i, 4fby:I, 4fby:a, 8gn0:I, 8gn0:i, 8gn1:I, 8gn1:i, 8gn2:I, 8gn2:i, 5gth:I, 5gth:i, 5gti:I, 5gti:i, 5h2f:I, 5h2f:i, 4il6:I, 4il6:i, 8ir5:I, 8ir5:i, 8ir6:I, 8ir6:i, 8ir7:I, 8ir7:i, 8ir8:I, 8ir8:i, 8ir9:I, 8ir9:i, 8ira:I, 8ira:i, 8irb:I, 8irb:i, 8irc:I, 8irc:i, 8ird:I, 8ird:i, 8ire:I, 8ire:i, 8irf:I, 8irf:i, 8irg:I, 8irg:i, 8irh:I, 8irh:i, 8iri:I, 8iri:i, 4ixq:I, 4ixq:i, 4ixr:I, 4ixr:i, 6jlj:I, 6jlj:i, 6jlk:I, 6jlk:i, 6jll:I, 6jll:i, 6jlm:I, 6jlm:i, 6jln:I, 6jln:i, 6jlo:I, 6jlo:i, 6jlp:I, 6jlp:i, 5kaf:I, 5kaf:i, 5kai:I, 5kai:i, 3kzi:I, 5mx2:I, 5mx2:i, 7nho:I, 4pbu:I, 4pbu:i, 4pj0:I, 4pj0:i, 7rf1:I, 7rf1:i, 7rf2:I, 7rf2:i, 7rf3:I, 7rf3:i, 7rf4:I, 7rf4:i, 7rf5:I, 7rf5:i, 7rf6:I, 7rf6:i, 7rf7:I, 7rf7:i, 7rf8:I, 7rf8:i, 4rvy:I, 4rvy:i, 1s5l:i, 5tis:I, 5tis:i, 4tnh:I, 4tnh:i, 4tni:I, 4tni:i, 4tnj:I, 4tnj:i, 4tnk:I, 4tnk:i, 4ub6:I, 4ub6:i, 4ub8:I, 4ub8:i, 5v2c:I, 5v2c:i, 4v62:AI, 4v62:BI, 4v82:AI, 4v82:BI, 6w1o:I, 6w1o:i, 6w1p:I, 6w1p:i, 6w1q:I, 6w1q:i, 6w1r:I, 6w1r:i, 6w1t:I, 6w1t:i, 6w1u:I, 6w1u:i, 6w1v:I, 6w1v:i, 5ws5:I, 5ws5:i, 5ws6:I, 5ws6:i, 3wu2:I, 3wu2:i, 7yq2:I, 7yq2:i, 7yq7:I, 7yq7:i, 5zzn:I, 5zzn:i
12 4hg6:A 747 28 0.3143 0.0147 0.3929 1.3 5eiy:A, 5ej1:A, 5ejz:A, 4p00:A, 4p02:A
13 6v35:H 198 27 0.2571 0.0455 0.3333 2.6 6v35:E, 6v35:F, 6v35:G
14 6l7o:F 647 29 0.2571 0.0139 0.3103 6.0 6l7p:F
15 1ar1:B 252 16 0.2000 0.0278 0.4375 9.1 7ate:B, 7atn:B, 7au3:B, 7au6:B, 3ehb:B, 3hb3:B, 1qle:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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