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BioLiP
>protein
MLTLKIAVYIVVGLFISLFIFGFLSSDPTRNPGRKD

The query sequence (length=36) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8tow:I 37 36 1.0000 0.9730 1.0000 4.88e-20 7n8o:I, 7n8o:i, 7rcv:I, 7rcv:i, 8tow:i, 6wj6:I
2 8c29:I 36 36 0.7778 0.7778 0.7778 8.49e-14 8c29:i, 3jcu:I, 3jcu:i, 5mdx:i, 7oui:I, 7oui:i, 5xnl:I, 5xnl:i, 5xnm:I, 5xnm:i, 6yp7:i
3 6j3y:I 35 35 0.7500 0.7714 0.7714 1.84e-13 6j3y:i, 6j3z:I, 6j3z:i, 6j40:I, 6j40:i, 8j5k:I, 8j5k:i, 6jlu:I, 6jlu:i, 7vd5:I, 7vd5:i
4 4yuu:I2 35 35 0.6944 0.7143 0.7143 1.07e-12 4yuu:I1, 4yuu:i1, 4yuu:i2
5 6kac:I 35 35 0.6944 0.7143 0.7143 1.19e-12 8bd3:I, 8bd3:i, 6kac:i, 6kad:I, 6kad:i, 6kaf:i, 6kaf:I, 8kde:I, 7pi0:I, 7pi0:i, 7pi5:I, 7pi5:i, 7pin:I, 7pin:i, 7pin:I1, 7pin:i1, 7piw:I, 7piw:i, 7piw:I1, 7piw:i1, 7pnk:I, 7pnk:i, 8zee:I
6 7y5e:IL 35 35 0.6944 0.7143 0.7143 2.44e-12 7y5e:I6, 7y5e:i6, 7y5e:iL, 7y7a:I9, 7y7a:i9, 7y7a:IE, 7y7a:iE, 7y7a:IO, 7y7a:iO, 7y7a:IZ, 7y7a:iZ, 7y7a:Im, 7y7a:im
7 8wql:ID 36 36 0.6944 0.6944 0.6944 5.01e-12 8wql:IE, 8wql:I1, 8wql:i1, 8wql:iD, 8wql:iE
8 8wb4:I 35 35 0.6389 0.6571 0.6571 1.74e-11 8wb4:i, 8xlp:i, 8xlp:I, 8xr6:i, 8xr6:I
9 8eqm:I 34 32 0.6111 0.6471 0.6875 1.31e-10 8eqm:i
10 5b5e:i 38 36 0.7222 0.6842 0.7222 4.73e-06 3a0b:I, 3a0b:i, 3a0h:I, 3a0h:i, 2axt:I, 2axt:i, 5b5e:I, 5b66:I, 5b66:i, 7cji:I, 7cji:i, 7cjj:I, 7cjj:i, 7cou:I, 7cou:i, 7czl:I, 7czl:i, 7d1t:I, 7d1t:i, 7d1u:I, 7d1u:i, 6dhe:I, 6dhe:i, 6dhf:I, 6dhf:i, 6dhg:I, 6dhg:i, 6dhh:I, 6dhh:i, 6dho:I, 6dho:i, 6dhp:I, 6dhp:i, 5e79:I, 5e79:i, 5e7c:I, 5e7c:i, 7eda:I, 9evx:I, 9evx:i, 8ez5:I, 8ez5:i, 8f4c:I, 8f4c:i, 8f4d:I, 8f4d:i, 8f4e:I, 8f4e:i, 8f4f:I, 8f4f:i, 8f4g:I, 8f4g:i, 8f4h:I, 8f4h:i, 8f4i:I, 8f4i:i, 8f4j:I, 8f4j:i, 8f4k:I, 8f4k:i, 4fby:I, 4fby:a, 8gn0:I, 8gn0:i, 8gn1:I, 8gn1:i, 8gn2:I, 8gn2:i, 5gth:I, 5gth:i, 5gti:I, 5gti:i, 5h2f:I, 5h2f:i, 4il6:I, 4il6:i, 8ir5:I, 8ir5:i, 8ir6:I, 8ir6:i, 8ir7:I, 8ir7:i, 8ir8:I, 8ir8:i, 8ir9:I, 8ir9:i, 8ira:I, 8ira:i, 8irb:I, 8irb:i, 8irc:I, 8irc:i, 8ird:I, 8ird:i, 8ire:I, 8ire:i, 8irf:I, 8irf:i, 8irg:I, 8irg:i, 8irh:I, 8irh:i, 8iri:I, 8iri:i, 4ixq:I, 4ixq:i, 4ixr:I, 4ixr:i, 6jlj:I, 6jlj:i, 6jlk:I, 6jlk:i, 6jll:I, 6jll:i, 6jlm:I, 6jlm:i, 6jln:I, 6jln:i, 6jlo:I, 6jlo:i, 6jlp:I, 6jlp:i, 5kaf:I, 5kaf:i, 5kai:I, 5kai:i, 3kzi:I, 5mx2:I, 5mx2:i, 7nho:I, 4pbu:I, 4pbu:i, 4pj0:I, 4pj0:i, 7rf1:I, 7rf1:i, 7rf2:I, 7rf2:i, 7rf3:I, 7rf3:i, 7rf4:I, 7rf4:i, 7rf5:I, 7rf5:i, 7rf6:I, 7rf6:i, 7rf7:I, 7rf7:i, 7rf8:I, 7rf8:i, 4rvy:I, 4rvy:i, 1s5l:i, 5tis:I, 5tis:i, 4tnh:I, 4tnh:i, 4tni:I, 4tni:i, 4tnj:I, 4tnj:i, 4tnk:I, 4tnk:i, 4ub6:I, 4ub6:i, 4ub8:I, 4ub8:i, 5v2c:I, 5v2c:i, 4v62:AI, 4v62:BI, 4v82:AI, 4v82:BI, 6w1o:I, 6w1o:i, 6w1p:I, 6w1p:i, 6w1q:I, 6w1q:i, 6w1r:I, 6w1r:i, 6w1t:I, 6w1t:i, 6w1u:I, 6w1u:i, 6w1v:I, 6w1v:i, 5ws5:I, 5ws5:i, 5ws6:I, 5ws6:i, 3wu2:I, 3wu2:i, 7yq2:I, 7yq2:i, 7yq7:I, 7yq7:i, 5zzn:I, 5zzn:i
11 7ymi:I 34 32 0.5000 0.5294 0.5625 7.25e-06 7ymi:i, 7ymm:1I, 7ymm:2I, 7ymm:3I, 7ymm:4I
12 6v35:H 198 26 0.2222 0.0404 0.3077 0.49 6v35:E, 6v35:F, 6v35:G
13 6k61:B 740 28 0.3056 0.0149 0.3929 2.4 6jeo:aB, 6jeo:bB, 6jeo:cB, 6jeo:dB, 6k61:b, 6tcl:B1, 6tcl:B2, 6tcl:B, 6tcl:BB, 7y3f:B
14 4hg6:A 747 15 0.2500 0.0120 0.6000 2.8 5eiy:A, 5ej1:A, 5ejz:A, 4p00:A, 4p02:A
15 7lx0:H 739 28 0.3056 0.0149 0.3929 7.1 7lx0:b, 7lx0:B, 6pnj:H, 6pnj:B, 6pnj:b
16 1lvg:A 190 19 0.3056 0.0579 0.5789 9.4
17 8pts:A 195 13 0.2500 0.0462 0.6923 9.7 8pts:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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