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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MLSQNVAKTTVPSYYMIRTNLPQRKPQNQWEGVYYFGGITKRQRHLILLQRKREREARMRAFSASCSNLLRLLEGGPFDL
AIRLAQHGLYQQASRIVDELHQQRALRMSHYGLLIDALSAPCLGQRILYGSAQCDPALTYKLLGDENGEERAQEAHRWFD
MAFALLTTECRMSGSEHRLPQATAAATHLVNALMRALLTCGYTHVSAVPDAVYDRMGLMGISPTISTYELVMLALSLQGN
MKEAESVFSFLRRHHNEHVTIGSFNALLLGHRECRQFDRCDAIWQELVDRRWPRASTLTAELYLRSIVDHSYTPTSGPLQ
RFGNINVVEKKKIPLVLAQMDDLGIPRAHLSRPLMDEVEDALRKFHIYKSRYYEWGRAVKQFNFIEFRRRNGWMYDLHLM
KNTTKQVGPLRDFNQPDATQAPVATVEIPAFFNERPAWEQPPLEETLYVTESRERYDDVRSGDIYEDRTRSLHDRSPTWM
NEVPETRYDHLYGVNHPDIAKIGIRRHLNAEYVNRKEVVERDAALMKKNLSTGRRLRRKVESSRTHRN

The query sequence (length=548) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7aor:ag 548 548 1.0000 1.0000 1.0000 0.0
2 7pua:DH 568 565 0.8084 0.7799 0.7841 0.0 6hiv:DH, 6hiw:DH, 6hiz:DH, 7pub:DH
3 7ane:ag 557 557 0.6588 0.6481 0.6481 0.0
4 6sg9:DH 472 534 0.6624 0.7691 0.6798 0.0 6sgb:DH
5 6xyw:BG 364 168 0.0657 0.0989 0.2143 0.052
6 4m59:A 687 62 0.0383 0.0306 0.3387 0.38 4m59:B, 4oe1:A, 4oe1:B
7 2anl:A 327 169 0.0602 0.1009 0.1953 0.67 2anl:B
8 5i9h:A 368 71 0.0292 0.0435 0.2254 1.4 5i9d:A
9 5i9h:A 368 79 0.0328 0.0489 0.2278 1.4 5i9d:A
10 5i9h:A 368 86 0.0347 0.0516 0.2209 1.9 5i9d:A
11 5i9h:A 368 79 0.0328 0.0489 0.2278 3.9 5i9d:A
12 5i9f:A 388 71 0.0292 0.0412 0.2254 1.4 5i9g:C
13 5i9f:A 388 110 0.0420 0.0593 0.2091 2.4 5i9g:C
14 5i9f:A 388 79 0.0310 0.0438 0.2152 4.4 5i9g:C
15 5i9f:A 388 79 0.0310 0.0438 0.2152 4.4 5i9g:C
16 5i9f:A 388 79 0.0310 0.0438 0.2152 4.4 5i9g:C
17 7yb9:A 430 128 0.0547 0.0698 0.2344 3.1 7bmi:A, 7bmj:A, 7bmj:C, 7e6j:A, 5jqy:A, 5jtc:A, 5jz6:A, 5jz8:A, 5jza:A, 5jzu:A, 6q9f:A, 6q9i:A, 6rk9:A, 6rk9:B, 7yb8:A, 7yba:A, 7ybb:A, 7ybc:A, 6yyu:A, 6yyv:A, 6yyw:A, 6yyx:A, 6yyy:A, 6z6q:A, 6z6r:A
18 1ls5:A 328 136 0.0566 0.0945 0.2279 4.8 5i70:A, 5i70:B, 1ls5:B
19 2qb6:A 393 69 0.0347 0.0483 0.2754 5.2 2qb6:B, 2qb7:A, 2qb7:B, 2qb8:A, 2qb8:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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