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BioLiP
>protein
MLQVDIGSTSGKAGSVVSVPITFTNVPKSGIYALSFRTNFDPQKVTVASIDAGSLIENASDFTTYYNNENGFASMTFEAP
VDRARIIDSDGVFATINFKVSDSAKVGELYNITTNSAYTSFYYSGTDEIKNVVYNDGKIEVIA

The query sequence (length=143) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4uyq:A 143 143 1.0000 1.0000 1.0000 1.70e-100
2 4fl4:I 309 110 0.2308 0.1068 0.3000 2.01e-08 2b59:B, 4fl4:C, 4fl4:F, 4fl4:L, 5g5d:B, 3kcp:A
3 5qcd:A 223 96 0.1818 0.1166 0.2708 0.32 2f1g:A, 2f1g:B, 2fq9:A, 2fq9:B, 2fra:A, 2fra:B, 2frq:A, 2frq:B, 2ft2:A, 2ft2:B, 2fud:A, 2fud:B, 2fye:A, 2g6d:A, 2g7y:A, 2g7y:B, 9gj2:A, 9gj2:B, 2h7j:A, 2h7j:B, 2hh5:B, 2hh5:A, 2hhn:B, 2hxz:A, 2hxz:B, 2hxz:C, 3iej:A, 3iej:B, 1ms6:A, 3n3g:A, 3n3g:B, 3n4c:A, 3n4c:B, 1npz:A, 1npz:B, 1nqc:A, 2op3:A, 2op3:B, 3ovx:A, 3ovx:B, 4p6e:A, 4p6e:B, 4p6g:A, 4p6g:B, 4p6g:C, 4p6g:D, 8pi3:A, 5qbu:A, 5qbu:B, 5qbv:A, 5qbv:B, 5qbw:A, 5qbx:A, 5qbx:B, 5qby:A, 5qby:B, 5qbz:A, 5qc0:A, 5qc0:B, 5qc1:A, 5qc1:B, 5qc2:A, 5qc2:B, 5qc3:A, 5qc3:B, 5qc4:A, 5qc4:B, 5qc5:A, 5qc5:B, 5qc6:A, 5qc6:B, 5qc7:A, 5qc7:B, 5qc8:A, 5qc8:B, 5qc9:A, 5qc9:B, 5qca:A, 5qca:B, 5qcb:A, 5qcb:B, 5qcc:A, 5qcc:B, 5qce:A, 5qce:B, 5qcf:A, 5qcg:A, 5qcg:B, 5qch:A, 5qch:B, 5qch:D, 5qch:C, 5qci:A, 5qcj:A, 5qcj:B, 5qcj:C, 2r9m:A, 2r9m:B, 2r9n:A, 2r9n:B, 2r9o:A, 2r9o:B, 8rnd:A, 6yyn:AAA, 6yyn:BBB, 6yyo:AAA, 6yyo:BBB, 6yyp:AAA, 6yyq:AAA, 6yyq:BBB, 6yyq:CCC, 6yyr:AAA, 6yyr:BBB
4 2w47:A 135 77 0.1818 0.1926 0.3377 0.90 2w1w:A, 2w1w:B
5 8rbq:D 305 63 0.1049 0.0492 0.2381 1.5
6 8ahx:D 349 63 0.1049 0.0430 0.2381 1.7 8rb8:D, 8rb9:D, 8rbm:D
7 2xd3:A 375 62 0.1469 0.0560 0.3387 2.3
8 6aqg:C 490 55 0.1399 0.0408 0.3636 2.7 6aqg:A, 6aqg:B, 6aqg:D, 5vl1:A, 5vl1:B, 5vl1:C, 5vl1:D
9 5myj:BX 99 43 0.1119 0.1616 0.3721 3.2
10 4pgh:D 358 71 0.1608 0.0642 0.3239 4.3 4pgh:A, 4pgh:B, 4pgh:C
11 4ci7:A 456 64 0.1259 0.0395 0.2812 5.4 4ci7:B, 4d59:A, 4d59:B, 4d5a:A, 4d5a:B
12 3erg:A 208 42 0.0839 0.0577 0.2857 6.7 3erg:B, 3ibh:A
13 4iu2:A 209 24 0.0769 0.0526 0.4583 7.7 8ajy:A, 8ajy:C, 4iu3:A
14 1kyw:C 361 54 0.1259 0.0499 0.3333 9.5 1kyw:F, 1kyz:A, 1kyz:C, 1kyz:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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