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BioLiP
>protein
MLQGKTIVLDPGHGGSDQGASSNTKYKSLEKDYTLKTAKELQRTLEKEGATVKMTRTDDTYVSLENRDIKGDAYLSIHND
ALESSNANGMTVYWYHDNQRALADTLDATIQKKGLLSNRGSRQENYQVLAQTKVPAVLLELGYISNPTDETMIKDQLHRQ
ILEQAIVDGLKIYFSA

The query sequence (length=176) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7tj4:B 176 176 1.0000 1.0000 1.0000 8.08e-130 7tj4:D
2 4rn7:A 186 181 0.3580 0.3387 0.3481 7.01e-30
3 5emi:A 180 175 0.3239 0.3167 0.3257 1.35e-25
4 1jwq:A 179 175 0.3295 0.3240 0.3314 4.71e-25
5 4bin:A 348 210 0.3807 0.1925 0.3190 2.28e-23
6 8c2o:A 228 222 0.3636 0.2807 0.2883 9.99e-20 8c2o:B
7 3ne8:A 226 213 0.3636 0.2832 0.3005 7.83e-19
8 5j72:A 638 163 0.3352 0.0925 0.3620 1.95e-18 5j72:B
9 7rag:B 197 200 0.3182 0.2843 0.2800 3.84e-17
10 8c0j:A 200 196 0.3295 0.2900 0.2959 3.57e-16 8c0j:C
11 7b3n:B 170 141 0.2443 0.2529 0.3050 1.03e-11 7b3n:A, 7b3n:C, 7b3n:D, 7b3n:E
12 7ago:A 214 215 0.3068 0.2523 0.2512 2.33e-07 7agl:A
13 4m6g:A 214 215 0.2670 0.2196 0.2186 6.14e-06 4lq6:A, 4m6i:A, 4m6i:B
14 7agm:A 218 217 0.3011 0.2431 0.2442 1.01e-05 7agm:B
15 1xov:A 315 137 0.2273 0.1270 0.2920 4.19e-05
16 1ji4:A 144 40 0.1023 0.1250 0.4500 0.87 4evb:A, 4evc:A, 1ji4:D, 1ji4:B, 1ji4:C, 1ji4:E, 1ji4:H, 1ji4:F, 1ji4:G, 1ji4:I, 1ji4:L, 1ji4:J, 1ji4:K
17 6iey:A 307 104 0.1420 0.0814 0.2404 1.4
18 2vpr:A 197 23 0.0682 0.0609 0.5217 1.8
19 5jla:D 259 42 0.0909 0.0618 0.3810 2.4 5jla:A, 5jla:B, 5jla:C
20 2dsx:A 52 39 0.0625 0.2115 0.2821 3.7 1rdg:A
21 3qs1:A 327 48 0.0852 0.0459 0.3125 4.2 3qs1:B, 3qs1:C, 3qs1:D
22 6u3j:A 876 39 0.0739 0.0148 0.3333 4.8 5rvw:A, 5rvw:B, 5rvx:A, 5rvx:B, 5rvy:A, 5rvy:B, 5rvz:A, 5rvz:B, 5rw0:A, 5rw0:B, 5rw1:A, 5rw1:B, 6sy1:A, 6sy1:B, 6u3j:B
23 2cy3:A 118 29 0.0682 0.1017 0.4138 7.4 1w7o:A
24 5l43:A 662 92 0.1534 0.0408 0.2935 9.4 5l43:B, 5l44:A, 5l44:B
25 4ici:A 159 46 0.1080 0.1195 0.4130 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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