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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MLPPDILQNGEFETIYFQTNPTYIKSPIHIPKSTIGKPDTVKIRHFFALLHQDLVVLGLEVFVYLQIYSDFVEKYVYVSK
CDTVGLEKSTIKIGKVIGPVLQYIINYNGYKIKMKNIEYRTLPKTQNLRLCVFTKPAKEYLFPNSAKNPYKNLLNGQSLL
RWWISIIDSITKGWNNHKLMIPGADKWATRKFIEKYSDWSEGHIFKKDGLAVQAIPLFPDDPKGRFLELVIVECRYGKMT
VSRFYQELAYRQEFLLGDCVSLIGCCKENLEVTYHDDLVSTVTISEYKEFMNLLKLVDFSDRVEVSNFVSNYRKSK

The query sequence (length=316) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7c3o:A 316 316 1.0000 1.0000 1.0000 0.0
2 2zfn:A 376 296 0.3291 0.2766 0.3514 3.93e-46 3cz7:A, 3qm0:A
3 3q33:A 394 312 0.3291 0.2640 0.3333 1.07e-42 3q35:A
4 5zba:A 360 281 0.2437 0.2139 0.2740 5.55e-16
5 7pnt:4 589 102 0.0949 0.0509 0.2941 0.018 7pnu:4, 7pnv:4, 7pnw:4
6 6e1q:A 569 44 0.0506 0.0281 0.3636 0.91 6avh:A, 6avh:C, 6avh:D
7 6avh:B 541 44 0.0506 0.0296 0.3636 0.99
8 3mx4:A 213 147 0.1108 0.1643 0.2381 2.1 3mx4:D, 3mx4:F, 3mx4:H, 3mx4:C, 3mx4:G, 3mx4:B, 3mx4:E, 3nic:A, 3nic:H, 3nic:C, 3nic:G, 3nic:B, 3nic:D, 3nic:E, 3nic:F
9 1ygp:A 858 144 0.1044 0.0385 0.2292 4.0 1ygp:B
10 4prl:A 330 100 0.0981 0.0939 0.3100 4.1 4prl:B
11 3jd5:o 461 57 0.0506 0.0347 0.2807 4.2
12 1fz0:C 388 98 0.0665 0.0541 0.2143 6.8 1fz1:C, 1fz2:C, 1fz8:C, 1fz8:D, 1fz9:D, 1fz9:C, 1xmf:C, 1xve:C, 1xvf:D, 1xvg:C, 1xvg:D
13 3vm5:A 499 39 0.0348 0.0220 0.2821 6.9
14 8ki8:A 1621 22 0.0316 0.0062 0.4545 8.0
15 8ki6:A 1580 22 0.0316 0.0063 0.4545 8.1
16 8ki7:A 2003 22 0.0316 0.0050 0.4545 8.1
17 6qp1:B 398 41 0.0443 0.0352 0.3415 8.3 6qp1:A, 6qp2:A, 6qp2:B
18 8any:A4 595 79 0.0696 0.0370 0.2785 9.8 8oir:Ae, 8ois:Ae, 7po2:4, 7qi4:A4, 7qi5:A4, 7qi6:A4, 6zm5:A4, 6zm6:A4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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