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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MLPISMSDEGDSFLVKDSLGENKIPKNPSKVVILDLGILDTFDALKLNDKVVGVPAKNLPKYLQQFKNKPSVGGVQQVDF
EAINALKPDLIIISGRQSKFYDKLKEIAPTLFVGLDNANFLSSFENNVLSVAKLYGLEKEALEKISDIKNEIEKAKSIVD
EDKKALIILTNSNKISAFGPQSRFGIIHDVLGINAVDENIKVGTHGKSINSEFILEKNPDYIFVVDRNVILGNKERAQGI
LDNALVAKTKAAQNKKIIYLDPEYWYLASGNGLESLKTMILEIKNAVK

The query sequence (length=288) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5ad1:A 290 288 1.0000 0.9931 1.0000 0.0 5a1j:A, 5a5d:A, 5a5v:A, 5adv:A, 5adv:B, 5adv:C, 5adw:A, 5adw:B, 5adw:C, 2chu:A, 2chu:B, 5lwh:A, 5oah:A, 5oah:B, 5od5:A, 5od5:C, 5tcy:A, 5tcy:B, 5tcy:C
2 8bax:A 281 285 0.4792 0.4911 0.4842 3.16e-94 8b7x:A, 8baw:A, 8baw:B
3 8bf6:A 278 281 0.4861 0.5036 0.4982 1.20e-84 8bj9:A
4 3gfv:B 285 279 0.4167 0.4211 0.4301 1.93e-80
5 6mfl:A 284 279 0.2812 0.2852 0.2903 2.21e-41 6mfl:B
6 7sf6:A 294 266 0.2118 0.2075 0.2293 4.85e-17
7 3lhs:A 291 284 0.2535 0.2509 0.2570 7.53e-12 3li2:A, 3li2:B
8 3tlk:A 296 313 0.2465 0.2399 0.2268 1.00e-10 3tlk:C, 3tlk:B
9 3tny:A 280 266 0.2292 0.2357 0.2481 2.92e-10
10 5b50:A 324 287 0.2535 0.2253 0.2544 3.51e-07 5az3:A, 5b4z:A, 5b51:A
11 3mwf:A 292 133 0.1528 0.1507 0.3308 6.88e-07
12 2why:A 283 157 0.1562 0.1590 0.2866 2.16e-06 2xuz:A, 2xv1:A
13 7w8f:A 278 147 0.1389 0.1439 0.2721 3.86e-06
14 2r7a:A 255 239 0.1944 0.2196 0.2343 9.95e-06
15 2r79:A 279 227 0.1875 0.1935 0.2379 1.10e-05
16 5ggx:D 267 168 0.1667 0.1798 0.2857 5.40e-05 5ggx:A, 5ggx:B, 5ggx:C
17 3r5t:A 296 170 0.1424 0.1385 0.2412 3.33e-04
18 5jj5:A 308 159 0.1424 0.1331 0.2579 0.098 4hmq:A, 4hmq:B, 5jj5:B
19 5gj3:A 270 261 0.1979 0.2111 0.2184 0.13 5y8b:A
20 3psa:A 326 274 0.2153 0.1902 0.2263 0.14 3psh:A
21 2q8p:A 258 204 0.1701 0.1899 0.2402 0.15 2q8q:A
22 4mlz:A 299 140 0.1181 0.1137 0.2429 0.33 4mlz:B
23 6tfo:C 424 83 0.0799 0.0542 0.2771 0.66 6tfd:A, 6tfd:C, 6tfd:B, 6tfo:A, 6tfo:B
24 5ysc:A 255 256 0.1944 0.2196 0.2188 1.3
25 7fhp:A 292 74 0.0729 0.0719 0.2838 1.9
26 4oxq:A 278 65 0.0764 0.0791 0.3385 2.5 4oxr:A, 4oxr:B
27 7yjm:B 471 72 0.0764 0.0467 0.3056 3.7 7yjk:B, 7yjk:F, 7yjn:B, 7yjo:B
28 7k5b:B 4524 101 0.1007 0.0064 0.2871 4.3 8bx8:B, 7k58:B, 7kek:B
29 3pjg:A 389 58 0.0729 0.0540 0.3621 5.5 3pln:A, 3plr:A
30 3a3c:A 451 86 0.0729 0.0466 0.2442 7.1 2zxt:A
31 3nu1:A 254 213 0.1493 0.1693 0.2019 8.4 3nu1:B
32 2oyr:A 245 60 0.0590 0.0694 0.2833 8.6
33 6t1f:C 195 73 0.0694 0.1026 0.2740 9.8 7bm8:A, 7bm8:B, 6s6h:A, 6t1f:A, 6t1f:B, 6t1f:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218