Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MLPGTFFEVLKNTGVVAIATQGEDGPHLVNTWNSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPG
TGFLIRGSAAFRTDGPEFEAIARFKWARAALVITVVSAEQTL

The query sequence (length=122) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3a20:A 122 121 0.9836 0.9836 0.9917 2.98e-85 3a20:B, 3a6q:A, 3a6q:B, 3a6r:A, 3a6r:B, 3a6r:C, 3a6r:D, 3amf:A, 3amf:B, 3awh:A, 3awh:B, 1axj:A, 2e83:A, 2e83:B, 1flm:A, 1flm:B, 3vy2:A, 3vy2:B, 3vy5:A, 3vy5:B, 3vya:A, 1wli:A, 1wli:B, 1wlk:A, 1wlk:B, 1wlk:C, 1wlk:D
2 7eg5:A 125 125 0.3934 0.3840 0.3840 1.37e-24 7eg5:B
3 3j7a:C 195 77 0.1721 0.1077 0.2727 0.62 3jbn:C, 3jbo:C, 3jbp:C, 6okk:C, 8tpu:SC
4 4r2w:D 251 90 0.1885 0.0916 0.2556 3.8 7q2w:FFF, 4r2w:A, 4r2w:B, 4r2w:C, 4r2w:E, 4r2w:F, 4r2x:C, 4r2x:D, 4r2x:E, 4r2x:F, 4r2x:A, 4r2x:B, 4yjk:D, 4yjk:F, 4yjk:A
5 4neh:A 1084 25 0.0820 0.0092 0.4000 7.7 5es4:A, 3k6s:A, 3k71:G
6 4nen:A 1063 25 0.0820 0.0094 0.4000 7.8
7 3k6s:C 885 25 0.0820 0.0113 0.4000 8.1 5es4:C, 5es4:E, 5es4:G, 3k6s:E, 3k6s:G, 3k71:A, 3k71:C, 3k71:E, 3k72:A, 3k72:C
8 6h57:A 795 25 0.0902 0.0138 0.4400 8.5
9 7aju:JD 811 25 0.0902 0.0136 0.4400 8.5 6zqd:JD, 6zqe:JD, 6zqf:JD
10 6zqg:JD 829 25 0.0902 0.0133 0.4400 8.5
11 7d63:RZ 839 25 0.0902 0.0131 0.4400 8.5 7d4i:RZ, 7d5t:RZ, 7mqj:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218