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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MLPGTFFEVLKNEGVVAIATQGEDGPHLVNTWQSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPG
TGFLIRGSAAFRTDGPEFEAIARFKWARAALVITVVSAEQTL

The query sequence (length=122) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3a20:A 122 121 0.9836 0.9836 0.9917 2.32e-85 3a20:B, 3a6q:A, 3a6q:B, 3a6r:A, 3a6r:B, 3a6r:C, 3a6r:D, 3amf:A, 3amf:B, 3awh:A, 3awh:B, 1axj:A, 2e83:A, 2e83:B, 1flm:A, 1flm:B, 3vy2:A, 3vy2:B, 3vy5:A, 3vy5:B, 3vya:A, 1wli:A, 1wli:B, 1wlk:A, 1wlk:B, 1wlk:C, 1wlk:D
2 7eg5:A 125 125 0.4016 0.3920 0.3920 2.51e-25 7eg5:B
3 3j7a:C 195 77 0.1721 0.1077 0.2727 0.23 3jbn:C, 3jbo:C, 3jbp:C, 6okk:C, 8tpu:SC
4 4r2w:D 251 90 0.1885 0.0916 0.2556 3.9 7q2w:FFF, 4r2w:A, 4r2w:B, 4r2w:C, 4r2w:E, 4r2w:F, 4r2x:C, 4r2x:D, 4r2x:E, 4r2x:F, 4r2x:A, 4r2x:B, 4yjk:D, 4yjk:F, 4yjk:A
5 5jiz:A 151 30 0.0984 0.0795 0.4000 4.1 6bq8:A, 5bv6:A, 5jix:A
6 2zpa:B 662 72 0.1803 0.0332 0.3056 4.7 2zpa:A
7 4neh:A 1084 25 0.0820 0.0092 0.4000 8.1 5es4:A, 3k6s:A, 3k71:G
8 3k6s:C 885 25 0.0820 0.0113 0.4000 8.1 5es4:C, 5es4:E, 5es4:G, 3k6s:E, 3k6s:G, 3k71:A, 3k71:C, 3k71:E, 3k72:A, 3k72:C
9 4nen:A 1063 25 0.0820 0.0094 0.4000 8.1
10 6h57:A 795 25 0.0902 0.0138 0.4400 8.5
11 7aju:JD 811 25 0.0902 0.0136 0.4400 8.5 6zqd:JD, 6zqe:JD, 6zqf:JD
12 6zqg:JD 829 25 0.0902 0.0133 0.4400 8.5
13 7d63:RZ 839 25 0.0902 0.0131 0.4400 8.5 7d4i:RZ, 7d5t:RZ, 7mqj:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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