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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MLNLTKQMIEIRTILNKVDSSSAHLTLPSIVVIGSQSSGKSSVLESIVGREFLPKMVTRRPIELTLVNTPNSNNVTADFP
SMRLYNIKDFKEVKRMLMELNMEEPIQLTIKSSRVPDLSLVDLPGYIQVETKIRDLCEKYLTAPNIILAISAADVDLANS
SALKASKAADPKGLRTIGVITKLDLVDPEKARSILNNKKYPLSMGYVGVITKTENTNGLKQIVSHQFEKAYFKENKKYFT
NCQVSTKKLREKLIKILEISMSNALEPTSTLIQQELDDTSYLFKVEFNDRHLTPKSYLLNNIDVLKLGIKEFQEKFHRNE
LKSILRAELDQKVLDVLATRYWKDDNLQDLSSSKLESDTDMLYWHKKLELASSGLTKMGIGRLSTMLTTNAILKELDNIL
ESTQLKNHELIKDLVSNTAINVLNSKYYSTADQVENCIKPFKYEIDLEERDWSLARQHSINLIKEELRQCNSRYQAIKNA
VGSKKLANVMGYLENESNKLLLERGSEAIFLDKRCKVLSFRLKMLKNKCHSTIEKDRCPEVFLSAVSDKLTSTAVLFLNV
ELLSDFFYNFPIELDRRLTLLGDEQVEMFAKEDPKISRHIELQKRKELLELALEKIDSILVFKKS

The query sequence (length=625) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6jsj:A 625 625 1.0000 1.0000 1.0000 0.0 6jsj:B, 6jsj:C
2 6djq:B 330 295 0.1888 0.3576 0.4000 1.34e-43
3 6def:C 368 309 0.1888 0.3207 0.3819 7.30e-43 6def:A, 6def:B, 6def:D, 6di7:A, 6djq:A, 6djq:C, 6djq:D, 6vjf:A, 6vjf:B, 6vjf:C, 6vjf:D
4 3l43:B 246 232 0.1584 0.4024 0.4267 9.67e-43 3l43:A, 3l43:C, 3l43:D
5 7ax3:D2 582 248 0.1664 0.1787 0.4194 1.89e-42 7ax3:B2, 7ax3:B, 7ax3:D, 7ax3:F, 7ax3:H, 7ax3:J, 7ax3:M, 7ax3:O, 7ax3:Q, 7ax3:S, 7ax3:U, 7ax3:W, 7ax3:Y, 7ax3:E2, 7ax3:G2, 7ax3:H2, 7ax3:I2, 7ax3:J2
6 6dlu:P 747 248 0.1664 0.1392 0.4194 5.19e-42 2aka:B, 5d3q:A, 5d3q:B, 6dlu:B, 6s9a:B, 2x2e:A, 2x2e:D, 2x2f:A, 2x2f:D, 3zyc:A, 3zyc:D
7 6s9a:A 312 209 0.1536 0.3077 0.4593 1.83e-41
8 8sxz:c 699 248 0.1648 0.1474 0.4153 2.29e-41 8sxz:b, 8sxz:f, 8sxz:g, 8sz8:b, 8sz8:c, 8sz8:f, 8sz8:g, 8t0k:b, 8t0k:c, 8t0k:f, 8t0k:g, 8t0r:b, 8t0r:c, 8t0r:f, 8t0r:g, 8tym:c, 8tym:f, 8tym:B, 8tym:C, 8tyn:c, 8tyn:f, 8tyn:C, 8tyn:F
9 3t34:B 341 268 0.1616 0.2962 0.3769 8.11e-38 3t34:A, 3t35:A, 3t35:B, 3t35:C, 3t35:D
10 1jwy:A 1039 252 0.1632 0.0982 0.4048 1.24e-37 4ae3:A, 2aka:A, 7b19:A, 7b1a:A, 3bz7:A, 3bz8:A, 3bz9:A, 1d0x:A, 1d0y:A, 1d0z:A, 1d1a:A, 1d1b:A, 1d1c:A, 1fmw:A, 2jhr:A, 2jj9:A, 1jx2:A, 1lvk:A, 3mjx:A, 3mkd:A, 1mma:A, 1mmd:A, 1mmg:A, 1mmn:A, 1mne:A, 3mnq:A, 3myh:X, 3myk:X, 3myl:X, 4pjk:A, 1vom:A, 1w9i:A, 1w9j:A, 1w9k:A, 1w9l:A, 2x9h:A, 2xel:A, 2xo8:A, 2y8i:X, 1yv3:A, 6z2s:A, 6z7t:A, 6z7t:B, 6z7u:A
11 4h1v:A 358 256 0.1600 0.2793 0.3906 1.41e-36
12 5wp9:A 590 241 0.1520 0.1610 0.3942 2.33e-36 8skn:A, 8skn:B, 3w6n:A, 3w6n:B, 3w6o:A, 3w6o:B, 3w6p:A, 3w6p:B, 5wp9:C, 5wp9:E, 5wp9:G, 5wp9:I, 5wp9:K, 5wp9:M, 5wp9:O
13 4p4s:B 336 311 0.1632 0.3036 0.3280 2.10e-24 4p4s:A, 4p4t:A
14 8eew:A 766 278 0.1344 0.1097 0.3022 2.17e-22 8eew:B, 8eff:A, 8eff:B, 8eff:C, 8eff:D, 8efr:A, 8efr:B, 8efr:C, 8efr:K, 8efr:D, 8efr:L, 8efr:E, 8efr:M, 8efr:F, 8efr:N, 8efr:G, 8efr:O, 8efr:H, 8efr:P, 8efr:I, 8efr:Q, 8efr:J, 8efr:R, 6jtg:A
15 5oxf:C 601 104 0.0544 0.0566 0.3269 0.002 5oxf:D
16 7wtt:K 1022 150 0.0528 0.0323 0.2200 0.40 7wtu:K, 7wtv:K, 7wtw:K, 7wtx:K, 7wtz:K, 7wu0:K
17 7dei:B 377 83 0.0320 0.0531 0.2410 0.62 7dei:A
18 7pmk:Q 766 157 0.0608 0.0496 0.2420 0.79 7pmn:Q
19 4jd0:A 245 70 0.0384 0.0980 0.3429 1.5
20 4y0a:A 179 36 0.0256 0.0894 0.4444 1.9
21 7jps:E 386 44 0.0208 0.0337 0.2955 2.2 7cte:E, 7ctf:E, 7ctg:E
22 5ujm:E 357 44 0.0208 0.0364 0.2955 2.3
23 7jpp:E 406 44 0.0208 0.0320 0.2955 2.7 7jpo:E, 7jpq:E, 7jpr:E, 5uj7:E, 5uj7:F
24 1nrj:B 191 65 0.0336 0.1099 0.3231 2.7
25 3kwo:A 149 53 0.0240 0.1007 0.2830 3.3 3kwo:B, 3kwo:C, 3kwo:D
26 1urg:A 373 133 0.0560 0.0938 0.2632 3.6 1urd:A, 1urd:B, 1urs:A, 1urs:B
27 8kab:h 430 53 0.0224 0.0326 0.2642 3.8
28 7uft:A 1032 63 0.0368 0.0223 0.3651 4.0 7uft:B, 7uft:C, 7uft:D
29 8csq:a 263 42 0.0192 0.0456 0.2857 6.1
30 8om2:5 291 40 0.0176 0.0378 0.2750 6.2 8d8j:5, 8d8k:5, 8d8l:5, 8om3:5, 8om4:5
31 8cli:A 542 63 0.0288 0.0332 0.2857 7.7 8clj:A, 8clj:F
32 3lxx:A 169 76 0.0304 0.1124 0.2500 8.0
33 3kxi:A 326 46 0.0240 0.0460 0.3261 8.7 2qth:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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