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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MLNLTKQMIEIRTILNKVDSSSAHLTLPSIVVIGSQSSGKSSVLESIVGREFLPKGSRPIELTLVNTPNSNNVTADFPSM
RLYNIKDFKEVKRMLMELNMEEPIQLTIKSSRVPDLSLVDLPGYITKIRDLCEKYLTAPNIILAISAADVDLANSSALKA
SKAADPKGLRTIGVITKLDLVDPEKARSILNNKKYPLSMGYVGVITKTENTNGLKQIVSHQFEKAYFKENKKYFTNCQVS
TKKLREKLIKILEISMSNALEPTSTLIQQELDDTSYLFKVEFNDRHLTPKSYLLNNIDVLKLGIKEFQEKFHRNELKSIL
RAELDQKVLDVLATRYWKDDNLQDLSSSKLESDTDMLYWHKKLELASSGLTKMGIGRLSTMLTTNAILKELDNILESTQL
KNHELIKDLVSNTAINVLNSKYYSTADQVENCIKPFKYEIDLEERDWSLARQHSINLIKEELRQCNSRYQAIKNAVGSKK
LANVMGYLENESKLLLERGSEAIFLDKRCKVLSFRLKMLKNKCHSTIEKDRCPEVFLSAVSDKLTSTAVLFLNVELLSDF
FYNFPIELDRRLTLLGDEQVEMFAKEDPKISRHIELQKRKELLELALEKIDSILVFKKS

The query sequence (length=619) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6jsj:A 625 625 0.9968 0.9872 0.9872 0.0 6jsj:B, 6jsj:C
2 6djq:B 330 295 0.1842 0.3455 0.3864 2.56e-40
3 7ax3:D2 582 248 0.1632 0.1735 0.4073 5.18e-40 7ax3:B2, 7ax3:B, 7ax3:D, 7ax3:F, 7ax3:H, 7ax3:J, 7ax3:M, 7ax3:O, 7ax3:Q, 7ax3:S, 7ax3:U, 7ax3:W, 7ax3:Y, 7ax3:E2, 7ax3:G2, 7ax3:H2, 7ax3:I2, 7ax3:J2
4 6dlu:P 747 248 0.1632 0.1352 0.4073 1.08e-39 2aka:B, 5d3q:A, 5d3q:B, 6dlu:B, 6s9a:B, 2x2e:A, 2x2e:D, 2x2f:A, 2x2f:D, 3zyc:A, 3zyc:D
5 6def:C 368 309 0.1842 0.3098 0.3689 2.13e-39 6def:A, 6def:B, 6def:D, 6di7:A, 6djq:A, 6djq:C, 6djq:D, 6vjf:A, 6vjf:B, 6vjf:C, 6vjf:D
6 3l43:B 246 232 0.1567 0.3943 0.4181 4.65e-39 3l43:A, 3l43:C, 3l43:D
7 8sxz:c 699 248 0.1616 0.1431 0.4032 5.64e-39 8sxz:b, 8sxz:f, 8sxz:g, 8sz8:b, 8sz8:c, 8sz8:f, 8sz8:g, 8t0k:b, 8t0k:c, 8t0k:f, 8t0k:g, 8t0r:b, 8t0r:c, 8t0r:f, 8t0r:g, 8tym:c, 8tym:f, 8tym:B, 8tym:C, 8tyn:c, 8tyn:f, 8tyn:C, 8tyn:F
8 6s9a:A 312 207 0.1486 0.2949 0.4444 2.00e-38
9 3t34:B 341 268 0.1599 0.2903 0.3694 3.13e-36 3t34:A, 3t35:A, 3t35:B, 3t35:C, 3t35:D
10 1jwy:A 1039 250 0.1632 0.0972 0.4040 2.51e-35 4ae3:A, 2aka:A, 7b19:A, 7b1a:A, 3bz7:A, 3bz8:A, 3bz9:A, 1d0x:A, 1d0y:A, 1d0z:A, 1d1a:A, 1d1b:A, 1d1c:A, 1fmw:A, 2jhr:A, 2jj9:A, 1jx2:A, 1lvk:A, 3mjx:A, 3mkd:A, 1mma:A, 1mmd:A, 1mmg:A, 1mmn:A, 1mne:A, 3mnq:A, 3myh:X, 3myk:X, 3myl:X, 4pjk:A, 1vom:A, 1w9i:A, 1w9j:A, 1w9k:A, 1w9l:A, 2x9h:A, 2xel:A, 2xo8:A, 2y8i:X, 1yv3:A, 6z2s:A, 6z7t:A, 6z7t:B, 6z7u:A
11 5wp9:A 590 241 0.1470 0.1542 0.3776 1.36e-33 8skn:A, 8skn:B, 3w6n:A, 3w6n:B, 3w6o:A, 3w6o:B, 3w6p:A, 3w6p:B, 5wp9:C, 5wp9:E, 5wp9:G, 5wp9:I, 5wp9:K, 5wp9:M, 5wp9:O
12 4h1v:A 358 256 0.1551 0.2682 0.3750 1.47e-33
13 4p4s:B 336 311 0.1616 0.2976 0.3215 1.06e-22 4p4s:A, 4p4t:A
14 8eew:A 766 278 0.1309 0.1057 0.2914 5.68e-21 8eew:B, 8eff:A, 8eff:B, 8eff:C, 8eff:D, 8efr:A, 8efr:B, 8efr:C, 8efr:K, 8efr:D, 8efr:L, 8efr:E, 8efr:M, 8efr:F, 8efr:N, 8efr:G, 8efr:O, 8efr:H, 8efr:P, 8efr:I, 8efr:Q, 8efr:J, 8efr:R, 6jtg:A
15 5oxf:C 601 26 0.0242 0.0250 0.5769 0.25 5oxf:D
16 7wtt:K 1022 150 0.0533 0.0323 0.2200 0.47 7wtu:K, 7wtv:K, 7wtw:K, 7wtx:K, 7wtz:K, 7wu0:K
17 7dei:B 377 83 0.0323 0.0531 0.2410 0.60 7dei:A
18 7pmk:Q 766 157 0.0614 0.0496 0.2420 0.79 7pmn:Q
19 4jd0:A 245 70 0.0388 0.0980 0.3429 1.5
20 4y0a:A 179 36 0.0258 0.0894 0.4444 1.8
21 5gom:A 407 138 0.0468 0.0713 0.2101 1.8 5gnr:A, 5gof:A, 5gom:B, 5yew:A, 5yew:B, 5yew:C
22 7jps:E 386 42 0.0210 0.0337 0.3095 3.1 7cte:E, 7ctf:E, 7ctg:E
23 5ujm:E 357 42 0.0210 0.0364 0.3095 3.2
24 3kwo:A 149 53 0.0242 0.1007 0.2830 3.3 3kwo:B, 3kwo:C, 3kwo:D
25 4pv4:A 436 86 0.0339 0.0482 0.2442 3.4 4pv4:B
26 7jpp:E 406 42 0.0210 0.0320 0.3095 3.7 7jpo:E, 7jpq:E, 7jpr:E, 5uj7:E, 5uj7:F
27 8kab:h 430 53 0.0226 0.0326 0.2642 3.7
28 3kxi:A 326 64 0.0323 0.0613 0.3125 4.0 2qth:A
29 7uft:A 1032 63 0.0372 0.0223 0.3651 4.1 7uft:B, 7uft:C, 7uft:D
30 2bh3:A 440 86 0.0323 0.0455 0.2326 4.7 1a16:A, 2bha:A, 2bhb:A, 2bhd:A, 2bn7:A, 2bws:A, 2bwt:A, 2bwv:A, 2bww:A, 2bwx:A, 2bwy:A, 1jaw:A, 1m35:A, 1m35:B, 1m35:C, 1m35:D, 1m35:E, 1m35:F, 1n51:A, 2v3x:A, 2v3y:A, 2v3z:A, 1w2m:A, 1w2m:B, 1w2m:C, 1w2m:D, 1w2m:E, 1w2m:F, 1w7v:A, 1w7v:B, 1w7v:C, 1w7v:D, 1wbq:A, 1wbq:B, 1wbq:C, 1wbq:D, 1wl6:A, 1wl9:A
31 7vex:A 412 85 0.0372 0.0558 0.2706 4.7 8h4m:A
32 8cli:A 542 63 0.0291 0.0332 0.2857 8.0 8clj:A, 8clj:F
33 8dqw:E 354 56 0.0275 0.0480 0.3036 8.8 8dqx:E, 8dqz:E, 8dr0:E, 8dr1:E, 8dr3:E, 8dr4:E, 8dr5:E, 8dr6:E, 8dr7:E, 8fs3:E, 8fs4:E, 8fs5:E, 8fs6:E, 8fs7:E, 7sgz:E, 7sh2:E, 7st9:E, 7stb:E, 7ste:E, 7tfh:E, 7tfi:E, 7tfj:E, 7tfk:E, 7tfl:E, 7thj:E, 7thv:E, 8thb:E, 8thc:E, 8thd:E, 7ti8:E, 7tib:E, 7tic:E, 7tid:E, 7tku:E, 8tw7:5, 8tw8:5, 8twa:5, 8twb:5, 7u19:E, 7u1a:E, 7u1p:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218