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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MLLPTLERLLERCGRPIFSNVEDVRMVMASLLDISAYVDRASTKVIAKPLRRFCHKDPDTVASVMEAVPIDAAEPTHGRR
AAMLLRCLPKHSCDEVIWERAVAATLAGLKSRKWDLHDYRVAMAHAGRGGRHAPALAAAAEEFVSSSARTASQSELPALL
VILTSLPELKRSPCLQVAADRIVQLSEILSPAAIGQICASVNKVSFRHTAMAIALQEEAIRFAEESDLFSAVQLFSFICQ
QEKEAISPDAVKCLAERVIEGKDLDQETVSVLCRALRSIPRPHRPELLREIGEMMEFLGGEVKELLELPVAKGGLKGDVS
AGDIQSFISKFLSLDGLLPADHDRPGTYMAAIVACVDYITERLEDIVSDENPPFSIIPHLLNINMEETRRCGQAIIREAA
EQGIHFPTLQVFRFLLALGDHNMRDQRVYRHLRNEFAKTASDIPMIQLCAALKCFVRGLMQNVETQSLDEQVEHELEKED
MDAFLRFCVENLRRGFADGMEVKCVMAATESLYQLGYTSTEFYEQVARYLGSKCSSASASVNSSETATAVCLALGEDILD
RHPDVHTFLLEVEKSGLKGEASLSPTEWMNKNDPANFITPLTEIQQEGWNIINRMVETRAADTEKLTALANEYVAILKST
RVDDLKYFFGVFEEKVFKQDRILKQCLDYLVESNAAVKLSATSIGAMLNSLAAIRFTYHRSVKQFMIAISTEQWSEMDAS
PLVKIVSAMAKLSLRLPQVLVHVGDRLLDVYTFLSPLDTALVINSLQSIGYGNDEVLMMLMRHAASSARRWDEVSLTLLF
GASGVHRLLRNVEVAAPLLEQAAGKTSSPHLRQRIAASLRRSALPRALVQSSTSLLTG

The query sequence (length=858) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8fni:9 858 858 1.0000 1.0000 1.0000 0.0 8fnk:9
2 4n0n:A 401 44 0.0163 0.0349 0.3182 0.60 4n0o:A, 4n0o:C, 4n0o:E, 4n0o:G
3 3s2e:A 340 67 0.0233 0.0588 0.2985 1.2 3s1l:A, 3s1l:B, 3s1l:C, 3s1l:D, 3s2e:B, 3s2e:C, 3s2e:D, 3s2e:E, 3s2e:F, 3s2e:G, 3s2e:H, 3s2f:A, 3s2f:B, 3s2f:C, 3s2f:D, 3s2f:E, 3s2f:F, 3s2f:G, 3s2f:H, 3s2g:A, 3s2g:B, 3s2g:C, 3s2g:D, 3s2g:E, 3s2g:F, 3s2g:G, 3s2g:H, 3s2i:A, 3s2i:B, 3s2i:C, 3s2i:D, 3s2i:E, 3s2i:F, 3s2i:G, 3s2i:H
4 6h9x:A 428 39 0.0186 0.0374 0.4103 7.1 7ap1:A, 6hhy:A, 6hhz:A, 6hi0:A, 6r1m:A, 6r1m:B, 6r1o:A
5 8k17:B 362 89 0.0408 0.0967 0.3933 8.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218