Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MLLDEGWLAEARRVPSPHYDCRPDDENPSLLVVHNISLPPGEFGGPWIDALFTGTIDPNAHPYFAGIAHLRVSAHCLIRR
DGEIVQYVPFDKRAWHAGVSSYQGRERCNDFSIGIELEGTDTLAYTDAQYQQLAAVTNALITRYPAIANNMTGHCNIAPE
RKTDPGPSFDWARFRALVTPS

The query sequence (length=181) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1j3g:A 187 181 1.0000 0.9679 1.0000 6.56e-137 2y28:A, 2y28:B, 2y28:C, 2y2b:A, 2y2b:B, 2y2b:C, 2y2d:A, 2y2d:B, 2y2d:C, 2y2e:A, 2y2e:B, 2y2e:C
2 3d2y:A 257 127 0.2762 0.1946 0.3937 3.82e-19 2bh7:A, 3d2z:A, 2wkx:A
3 4bol:A 243 125 0.2707 0.2016 0.3920 1.32e-18 4bol:B, 4bpa:B
4 4bxd:A 255 97 0.2099 0.1490 0.3918 2.26e-13 4bxd:B, 4bxe:A, 4bxe:B
5 3hmb:B 156 54 0.1105 0.1282 0.3704 0.063 3hmb:A, 3hmb:C, 3rdr:A
6 5x06:F 228 31 0.0773 0.0614 0.4516 0.71 5x06:E, 5x06:G, 5x06:H
7 1fwx:A 591 47 0.1050 0.0321 0.4043 0.74 1fwx:B, 1fwx:C, 1fwx:D, 2iwf:A, 2iwf:B, 2iwk:A, 2iwk:B
8 6k4t:A 260 51 0.0884 0.0615 0.3137 2.2 5axo:A, 5axr:A, 5aya:A, 5b15:A, 5b1u:A, 6k4x:A, 3vpe:A, 3vqz:A
9 7rxg:B 650 57 0.1105 0.0308 0.3509 2.2 7rxg:A, 7rxh:A
10 7rx2:B 615 57 0.1105 0.0325 0.3509 2.2 6e0h:B, 6e0h:A, 6e1o:B, 6e1o:A, 7rwj:B, 7rwj:A, 7rx2:A
11 6sh6:A 681 27 0.0608 0.0162 0.4074 3.8 8ejm:A, 8ro2:DX, 5xdr:A
12 7aih:K 179 58 0.0939 0.0950 0.2931 8.6 7am2:K, 7ane:K

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218