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BioLiP
>protein
MLKVSKSPSLVRLKTRGESVCPISKTVDSFEVSVEYIPRGAVLAIEEFKKMVDSYRGREILHEELAVDLLEKVKAAVNPP
YVKVTVKSYYIGVEVEVVAESGGVPPVYI

The query sequence (length=109) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5jyx:B 109 109 1.0000 1.0000 1.0000 3.34e-73 5jyx:A, 5jyx:E, 5jyx:C, 5jyx:J, 5jyx:D, 5jyx:H, 5jyx:F, 5jyx:O, 5jyx:G, 5jyx:L, 5jyx:I, 5jyx:K, 5jyx:M, 5jyx:N
2 1wm9:A 185 48 0.1468 0.0865 0.3333 0.002 1wm9:B, 1wm9:C, 1wm9:D, 1wm9:E, 1wuq:A, 1wuq:B, 1wuq:E, 1wuq:C, 1wuq:D, 1wur:A, 1wur:B, 1wur:E, 1wur:C, 1wur:D
3 4f8b:B 145 69 0.1468 0.1103 0.2319 0.099 4f8b:A, 4f8b:C, 4f8b:D, 4f8b:E, 4fgc:A, 4fgc:B, 4fgc:C, 4fgc:D, 4fgc:E, 5udg:A, 5udg:D, 5udg:E
4 4g5d:A 283 38 0.1284 0.0495 0.3684 0.69 4g5d:B
5 4g06:A 68 22 0.0826 0.1324 0.4091 0.90 6jip:A, 6jiq:A, 5zkl:A
6 4rsm:A 315 54 0.1101 0.0381 0.2222 1.00 4rsm:B, 4rsm:C, 4rsm:D
7 4gba:B 206 33 0.1193 0.0631 0.3939 1.0 4gba:A
8 2i89:A 90 36 0.1101 0.1333 0.3333 1.2 2i89:B, 2i89:C, 2i89:D, 1icc:A, 1icc:B, 1icc:D, 1lj0:A, 1lj0:B, 1lj0:C, 1lj0:D, 3mus:B
9 8x2i:A 2303 83 0.2385 0.0113 0.3133 1.3
10 8x2h:A 2363 83 0.2385 0.0110 0.3133 1.3 8jb5:A, 2vkd:A, 2vkd:B, 2vkd:C, 2vkh:A, 2vkh:B, 2vkh:C, 2vl8:A, 2vl8:B, 2vl8:C
11 8jsg:A 167 25 0.0826 0.0539 0.3600 2.5 8jsh:A, 5me0:Z, 5me1:Z
12 1awp:A 86 36 0.1101 0.1395 0.3333 2.8 1awp:B, 1b5m:A, 1eue:A, 1eue:B, 4hil:A, 4hil:B, 1icc:C, 3mus:A
13 1o9l:A 468 89 0.2110 0.0491 0.2584 2.8 3k6m:C, 2nrb:A, 3oxo:E, 3oxo:F, 3oxo:G, 3oxo:H
14 4xuk:A 291 94 0.2202 0.0825 0.2553 5.4 4xuk:B
15 7yb2:D 264 35 0.1284 0.0530 0.4000 6.2 8hfj:A, 8hfj:B, 8hfj:C, 8hfj:D, 8hfk:A, 8hfk:B, 8hfk:C, 8hfk:D, 7yb1:D, 7yb1:A, 7yb1:B, 7yb1:C, 7yb2:A, 7yb2:B, 7yb2:C
16 7t7t:A 466 74 0.2110 0.0494 0.3108 6.8 7t7t:B
17 8q6p:7 298 47 0.1468 0.0537 0.3404 8.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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