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BioLiP
>protein
MLKVSKSPSLVRLKTRGESVCPISKTVDSFEVSVEYIPRGAVLAIEEFKKMVDSYRGREILHEELAVDLLEKVKAAVNPP
YVKVTVKSYYIGVEVEVVAESGGVP

The query sequence (length=105) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5jyx:B 109 105 1.0000 0.9633 1.0000 2.95e-70 5jyx:A, 5jyx:E, 5jyx:C, 5jyx:J, 5jyx:D, 5jyx:H, 5jyx:F, 5jyx:O, 5jyx:G, 5jyx:L, 5jyx:I, 5jyx:K, 5jyx:M, 5jyx:N
2 1wm9:A 185 48 0.1524 0.0865 0.3333 0.001 1wm9:B, 1wm9:C, 1wm9:D, 1wm9:E, 1wuq:A, 1wuq:B, 1wuq:E, 1wuq:C, 1wuq:D, 1wur:A, 1wur:B, 1wur:E, 1wur:C, 1wur:D
3 4f8b:B 145 69 0.1524 0.1103 0.2319 0.10 4f8b:A, 4f8b:C, 4f8b:D, 4f8b:E, 4fgc:A, 4fgc:B, 4fgc:C, 4fgc:D, 4fgc:E, 5udg:A, 5udg:D, 5udg:E
4 4g5d:A 283 38 0.1333 0.0495 0.3684 0.52 4g5d:B
5 4rsm:A 315 54 0.1143 0.0381 0.2222 0.85 4rsm:B, 4rsm:C, 4rsm:D
6 4gba:B 206 33 0.1238 0.0631 0.3939 0.88 4gba:A
7 4g06:A 68 22 0.0857 0.1324 0.4091 0.93 6jip:A, 6jiq:A, 5zkl:A
8 8x2i:A 2303 83 0.2476 0.0113 0.3133 1.1
9 8x2h:A 2363 83 0.2476 0.0110 0.3133 1.2 8jb5:A, 2vkd:A, 2vkd:B, 2vkd:C, 2vkh:A, 2vkh:B, 2vkh:C, 2vl8:A, 2vl8:B, 2vl8:C
10 2i89:A 90 36 0.1143 0.1333 0.3333 1.4 2i89:B, 2i89:C, 2i89:D, 1icc:A, 1icc:B, 1icc:D, 1lj0:A, 1lj0:B, 1lj0:C, 1lj0:D, 3mus:B
11 5vpu:A 509 82 0.2095 0.0432 0.2683 1.6
12 8jsg:A 167 25 0.0857 0.0539 0.3600 2.4 8jsh:A, 5me0:Z, 5me1:Z
13 1awp:A 86 36 0.1143 0.1395 0.3333 3.4 1awp:B, 1b5m:A, 1eue:A, 1eue:B, 4hil:A, 4hil:B, 1icc:C, 3mus:A
14 1o9l:A 468 86 0.2095 0.0470 0.2558 3.9 3k6m:C, 2nrb:A, 3oxo:E, 3oxo:F, 3oxo:G, 3oxo:H
15 7yb2:D 264 35 0.1333 0.0530 0.4000 5.0 8hfj:A, 8hfj:B, 8hfj:C, 8hfj:D, 8hfk:A, 8hfk:B, 8hfk:C, 8hfk:D, 7yb1:D, 7yb1:A, 7yb1:B, 7yb1:C, 7yb2:A, 7yb2:B, 7yb2:C
16 4xuk:A 291 94 0.2286 0.0825 0.2553 5.6 4xuk:B
17 5ugh:B 365 59 0.2095 0.0603 0.3729 8.1 6fbn:B, 4ktt:A, 4ktt:C, 4ktv:C, 4ndn:C, 7rw5:D
18 8q6p:7 298 52 0.1619 0.0570 0.3269 8.3
19 2ohf:A 327 56 0.1619 0.0520 0.3036 8.7
20 7t7t:A 466 74 0.2190 0.0494 0.3108 9.6 7t7t:B
21 7mbm:A 339 29 0.0952 0.0295 0.3448 9.9 5ov3:B, 6pwv:A, 6pww:A, 6pwx:A, 6w5n:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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