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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MLKTISPLISPELLKVLAEMGHGDEIIFSDAHFPAHSMGPQVIRADGLLVSDLLQAIIPLFELDSYAPPLVMMAAVEGDT
LDPEVERRYRNALSLQAPCPDIIRINRFAFYERAQKAFAIVITGERAKYGNILLKKGVTP

The query sequence (length=140) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2wcv:B 140 140 1.0000 1.0000 1.0000 8.10e-101 2wcv:A, 2wcv:C, 2wcv:D, 2wcv:E, 2wcv:F, 2wcv:G, 2wcv:H, 2wcv:I, 2wcv:J
2 2wcu:A 149 145 0.5143 0.4832 0.4966 6.17e-37 2wcu:B
3 4a34:I 142 139 0.4500 0.4437 0.4532 4.12e-33 4a34:A, 4a34:B, 4a34:C, 4a34:D, 4a34:E, 4a34:F, 4a34:G, 4a34:H, 4a34:J, 4a34:K, 4a34:O, 4a34:L, 4a34:M, 4a34:N, 4a34:P, 4a34:Q, 4a34:R, 4a34:S, 4a34:T
4 1ogd:A 131 137 0.2786 0.2977 0.2847 4.60e-05 1ogd:B, 1ogd:C, 1ogd:D, 1ogd:E, 1oge:A, 1oge:B, 1oge:C, 1oge:D, 1oge:E
5 8hkx:S27E 59 48 0.0929 0.2203 0.2708 0.65 8hky:S27E, 8hkz:S27E, 8hl1:S27E, 8hl2:S27E, 8hl3:S27E, 8hl4:S27E, 8hl5:S27E, 8wkp:S27E, 8wq2:S27E, 8wq4:S27E
6 6l7o:A 371 93 0.1786 0.0674 0.2688 2.8 6l7p:A
7 7n59:A 590 74 0.1571 0.0373 0.2973 3.6 7n59:B, 7n5a:A, 7n5a:B, 7n5b:A, 7n5b:B
8 7y7u:A 288 36 0.0929 0.0451 0.3611 4.3 7y7u:B
9 1e19:A 313 35 0.0929 0.0415 0.3714 5.4 1e19:B
10 6msj:B 411 102 0.2000 0.0681 0.2745 9.5 8cvt:B, 5gjq:I, 5gjr:I, 5gjr:w, 5l4g:I, 5m32:d, 6msb:B, 6msd:B, 6mse:B, 6msk:B, 7qxn:B, 7qxp:B, 7qxu:B, 7qxw:B, 7qxx:B, 7qy7:B, 7qyb:B, 5t0c:AB, 5t0c:BB, 5t0g:B, 5t0h:B, 5t0i:B, 5vfp:B, 5vfq:B, 5vfr:B, 5vfs:B, 7w37:B, 7w38:B, 7w39:B, 7w3a:B, 7w3c:B, 7w3f:B, 7w3g:B, 7w3h:B, 7w3i:B, 7w3j:B, 7w3k:B, 6wjd:B, 6wjn:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218