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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MLKLAIPKGRLEEKVMTYLKKTGVIFERESSILREGKDIVCFMVRPFDVPTYLVHGVADIGFCGTDVLLEKETSLIQPFF
IPTNISRMVLAGPKGRGIPEGEKRIATKFPNVTQRYCESKGWHCRIIPLKGSVELAPIAGLSDLIVDITETGRTLKENNL
EILDEIFVIRTHVVVNPVSYRTKREKVVSFLEKLQEVIEHD

The query sequence (length=201) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1usy:G 203 201 0.9950 0.9852 0.9950 6.01e-147 1usy:F, 1usy:E, 1usy:H
2 6fca:A 209 205 0.3731 0.3589 0.3659 2.77e-37 6fct:A, 6fcw:A, 6fcy:A, 6fd9:A, 6ftt:E, 6ftt:H, 6ftt:G, 6ftt:F, 6fu2:C, 6fu2:D, 6fu7:C, 6fu7:D, 6fua:C, 6fua:D, 6r02:E, 6r02:F, 6r02:G, 6r02:H, 7z6r:C, 7z6r:D, 7z8u:A
3 1z7n:F 205 206 0.3781 0.3707 0.3689 1.19e-31 1z7m:G, 1z7m:E, 1z7m:H, 1z7n:E, 1z7n:G, 1z7n:H
4 2vd3:A 289 193 0.3085 0.2145 0.3212 6.05e-25 2vd3:B
5 7dah:C 288 211 0.3284 0.2292 0.3128 9.59e-20 7dah:F
6 1h3d:A 288 216 0.3085 0.2153 0.2870 4.41e-17 1q1k:A
7 5lht:A 284 172 0.2438 0.1725 0.2849 4.85e-17 5lhu:A, 1nh8:A, 5u99:A
8 4yb6:A 296 204 0.2985 0.2027 0.2941 6.57e-13 5ub9:A, 5ub9:B, 5ubg:A, 5ubg:B, 5ubh:A, 5ubh:B, 5ubi:A, 5ubi:B, 4yb5:A, 4yb5:E, 4yb5:B, 4yb5:C, 4yb5:F, 4yb5:D, 4yb6:E, 4yb6:B, 4yb6:C, 4yb6:F, 4yb6:D, 4yb7:B, 4yb7:C, 4yb7:D, 4yb7:E, 4yb7:I, 4yb7:K, 4yb7:A, 4yb7:F, 4yb7:G, 4yb7:H, 4yb7:J, 4yb7:L
9 6czm:E 342 227 0.2736 0.1608 0.2423 2.63e-08 6czm:A, 6czm:C, 6czm:D
10 6czm:F 315 175 0.1990 0.1270 0.2286 0.099 6czm:B
11 3i9v:7 127 34 0.0647 0.1024 0.3824 1.4 3i9v:H, 3iam:7, 3iam:H, 3ias:Z, 2ybb:7
12 8wev:A 486 37 0.0697 0.0288 0.3784 4.2 8wev:B
13 3ht5:A 335 29 0.0697 0.0418 0.4828 4.5 5u3f:A, 5u3f:B
14 8qbh:A 377 43 0.0746 0.0398 0.3488 7.5
15 6pv4:C 608 78 0.0995 0.0329 0.2564 8.1 6pv4:A, 6pv4:B, 6pv4:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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