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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MLKIIIPTTMLLPMTWMSKHNMIWINATVHSLLISLISLSLLNQLGENSLNFSLTFFSDSLSAPLLVLTTWLLPLMLMAS
QSHLSKETTTRKKLYITMLILLQLFLIMTFTATELILFYILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPL
LVALVYIQNTTGSLNFLIIHYWSHPLSNSWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGG
YGMMRITTILNPLTNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAIMIQTPWSFMGATALMIAHG
LTSSMLFCLANTNYERVHSRTMILARGLQTLLPLMATWWLVASLTNLALPPSINLIGELFIITASFSWSNITIILMGMNM
MITALYSLYMLITTQRGKYTHHINNIKPSFTRENALMALHILPLLLLTLNPKMILGPL

The query sequence (length=458) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7v2c:r 459 458 1.0000 0.9978 1.0000 0.0 7v2d:r, 7v2e:r, 7v2f:r, 7v2h:r, 7v2k:r, 7v2r:r, 7v30:r, 7v31:r, 7v32:r, 7v33:r, 7v3m:r, 7vbl:r, 7vbp:r, 7vc0:r, 7vwl:r, 7vxs:r, 7vy1:r, 7vy9:r, 7vye:r, 7vyg:r, 7vyi:r, 7vys:r, 7vz8:r, 7vzv:r, 7vzw:r, 7w00:r, 7w0h:r, 7w0r:r, 7w0y:r, 7w1o:r, 7w1p:r, 7w1t:r, 7w1u:r, 7w1v:r, 7w1z:r, 7w20:r, 7w2k:r, 7w2l:r, 7w2r:r, 7w2u:r, 7w2y:r, 7w31:r, 7w32:r, 7w35:r, 7w4c:r, 7w4d:r, 7w4e:r, 7w4f:r, 7w4g:r, 7w4j:r, 7w4k:r, 7w4l:r, 7w4m:r, 7w4n:r, 7w4q:r
2 5lnk:M 459 458 0.8690 0.8671 0.8690 0.0 8q0a:M, 8q0f:M, 8q0m:M, 8q0o:M, 8q1y:M, 8q25:M, 8q45:M, 8q48:M, 8q49:M, 8q4a:M, 7qso:M, 7r4f:M, 7r4g:M, 6zkm:M, 6zkn:M, 6zku:M, 6zkv:M
3 5xtc:r 459 456 0.7380 0.7364 0.7412 0.0 5xtd:r, 5xth:r, 5xti:r, 5xti:Br
4 8iaq:M 459 456 0.7271 0.7255 0.7303 0.0 8ib6:M, 8ibb:M, 8ibf:M, 8ic4:M
5 8bpx:M 494 420 0.3100 0.2874 0.3381 1.46e-66 7a23:M, 7aqq:M, 7ar7:M, 7ar8:M, 7arb:M, 8bef:M
6 8qby:M 503 407 0.2707 0.2465 0.3047 3.46e-60 8qc1:M
7 6rfq:4 486 415 0.2991 0.2819 0.3301 2.60e-52 6rfr:4, 6y79:4
8 3rko:M 504 376 0.2773 0.2520 0.3378 6.97e-51 3rko:C
9 8e9i:M 518 383 0.2467 0.2181 0.2950 2.97e-45 8e9g:M, 8e9h:M
10 7zmb:4 494 405 0.2817 0.2611 0.3185 4.13e-44 7zme:4, 7zmg:4, 7zmh:4
11 6l7o:D 504 408 0.2358 0.2143 0.2647 1.81e-36 6l7p:D
12 7zme:5 670 366 0.2074 0.1418 0.2596 1.05e-13 7zmg:5
13 7v2h:l 606 400 0.2118 0.1601 0.2425 1.86e-11 7vc0:l, 7vy1:l, 7vys:l, 7w0h:l, 7w2l:l, 7w2r:l, 7w2y:l, 7w32:l, 7w4q:l
14 6l7o:F 647 401 0.1900 0.1345 0.2170 1.66e-10 6l7p:F
15 8bpx:L 665 379 0.1878 0.1293 0.2269 4.14e-10 8bef:L
16 6rfq:5 654 389 0.2052 0.1437 0.2416 4.48e-10 7o6y:5, 6rfr:5
17 5lnk:L 599 381 0.2140 0.1636 0.2572 6.72e-10
18 3rko:L 612 413 0.2052 0.1536 0.2276 2.07e-09 3rko:B
19 6tjv:F 600 283 0.1485 0.1133 0.2403 2.76e-08
20 8gym:n5 709 274 0.1463 0.0945 0.2445 3.93e-08 8gym:N5, 7tgh:5
21 7a23:a 600 371 0.1834 0.1400 0.2264 1.55e-07
22 8iuf:N4 478 152 0.0983 0.0941 0.2961 7.68e-07 8j9h:N4, 8j9i:N4, 8j9j:N4
23 8qby:L 659 385 0.1769 0.1229 0.2104 3.23e-06 8qc1:L
24 6l7o:B 493 341 0.1528 0.1420 0.2053 3.26e-04 6l7p:B
25 8iaq:N 344 189 0.1026 0.1366 0.2487 0.002 8ib6:N, 8ibb:N, 8ibf:N, 8ic4:N
26 7aqq:N 488 224 0.1157 0.1086 0.2366 0.003 7a23:I, 7a24:I, 7ar7:N, 7ar8:N, 8bef:N, 8bpx:N
27 8e9g:L 625 389 0.1725 0.1264 0.2031 0.042 8e9h:L, 8e9i:L
28 5xtc:i 347 137 0.0786 0.1037 0.2628 0.089 5xtd:i, 5xth:i, 5xti:i, 5xti:Bi
29 8qby:N 479 42 0.0328 0.0313 0.3571 0.38
30 7zmb:2 558 188 0.1070 0.0878 0.2606 0.67 7zme:2, 7zmg:2, 7zmh:2
31 7qso:N 347 95 0.0546 0.0720 0.2632 1.6 7r41:N, 7r42:N, 7r44:N, 7r45:N, 7r47:N, 7r48:N, 7r4c:N, 7r4d:N, 7r4f:N, 7r4g:N, 6zkm:N, 6zkn:N, 6zku:N, 6zkv:N
32 5gup:i 347 96 0.0633 0.0836 0.3021 2.5 7v2c:i, 7v2d:i, 7v2e:i, 7v2f:i, 7v2h:i, 7v2k:i, 7v2r:i, 7v30:i, 7v31:i, 7v32:i, 7v33:i, 7v3m:i, 7vbl:i, 7vbp:i, 7vc0:i, 7vwl:i, 7vxs:i, 7vy1:i, 7vy9:i, 7vye:i, 7vyg:i, 7vyi:i, 7vys:i, 7vz8:i, 7vzv:i, 7vzw:i, 7w00:i, 7w0h:i, 7w0r:i, 7w0y:i, 7w1o:i, 7w1p:i, 7w1t:i, 7w1u:i, 7w1v:i, 7w1z:i, 7w20:i, 7w2k:i, 7w2r:i, 7w2u:i, 7w2y:i, 7w31:i, 7w32:i, 7w35:i, 7w4c:i, 7w4d:i, 7w4e:i, 7w4f:i, 7w4g:i, 7w4j:i, 7w4k:i, 7w4l:i, 7w4m:i, 7w4n:i, 7w4q:i
33 7p1k:B 433 55 0.0437 0.0462 0.3636 4.3 7p1k:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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