Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MLKFMLDTNTCIFTIKNKPEHIRERFNLNTSRMCISSITLMELIYGAEKSLAPERNLAVVEGFISRLEVLDYDTQAAIHT
GQIRAELARKGTPVGPYDQMIAGHAGSRGLVVVTNNLREFERIPGIRIEDWC

The query sequence (length=132) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ifc:A 132 132 1.0000 1.0000 1.0000 1.36e-97 6ifc:C, 6ifc:E, 6ifc:G
2 5ecd:A 132 130 0.7652 0.7652 0.7769 9.53e-77 5ecd:B
3 8uat:F 351 74 0.1818 0.0684 0.3243 1.0 3hf3:A, 3hf3:B, 3hf3:C, 3hf3:D, 3hgj:A, 3hgj:B, 3hgj:C, 3hgj:D, 5nux:A, 5nux:B, 5nux:C, 5nux:D, 5ogt:A, 5ogt:B, 5ogt:C, 5ogt:D, 8uaj:A, 8uaj:B, 8uaj:C, 8uaj:D, 8uat:B, 8uat:C, 8uat:D, 8uat:E, 8uat:G, 8uat:H, 8uat:A
4 7vpp:A 904 54 0.1136 0.0166 0.2778 1.2 6buy:A, 6bv0:A, 6bv1:A, 6bv2:A, 6bv3:A, 6bv4:A, 4f5c:A, 4f5c:B, 4fke:A, 4fkh:A, 4fkk:A, 4hom:A, 5lds:D, 5lds:A, 5lds:B, 5lds:C, 5lg6:A, 5lg6:B, 4naq:A, 4nz8:A, 4ou3:A, 7vpp:C, 5z65:A
5 3e27:C 189 61 0.1364 0.0952 0.2951 1.3 3e27:A, 3e27:B, 3e27:D, 3hfj:A, 3hfj:B, 3mla:A, 3mla:B, 3mlb:A, 3mlb:B, 3mmx:B, 3mmx:C, 3mmx:A, 3mmx:D, 2qtn:B, 2qtr:A, 2qtr:B, 2qtr:C
6 3eo7:A 487 57 0.1515 0.0411 0.3509 2.8
7 2uz9:A 444 35 0.0909 0.0270 0.3429 4.2 4aql:A, 3e0l:A, 3e0l:B
8 4fvv:B 415 38 0.0833 0.0265 0.2895 5.1 4isq:C, 4isq:A, 4isq:B, 4isr:A, 4isr:B, 4isr:C, 5lr0:A, 5lr0:B
9 3r4s:A 424 56 0.1136 0.0354 0.2679 7.5 3r4s:B
10 6hwj:A 428 64 0.1439 0.0444 0.2969 9.9 6hwj:B, 6hwk:A, 6hwk:C, 6hwk:D, 6hwl:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218