Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MLIRRLKDARLRAGISQEKLGVLAGIDEASASARMNQYEKGKHAPDFEMANRLAKVLKIPVSYLYTPEDDLAQIILTWNE
LNEQERKRINFY

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4jqd:E 97 92 1.0000 0.9485 1.0000 9.38e-65 4jcx:A, 4jcx:B, 4jcy:A, 4jcy:B, 4jqd:F, 4jqd:A, 4jqd:B
2 4utu:A 229 65 0.2500 0.1004 0.3538 0.019 4utu:B, 4utw:A, 4utw:B, 4utw:C, 4utw:D
3 5ghg:B 433 54 0.1848 0.0393 0.3148 0.66 5ghf:A
4 6knb:B 1120 41 0.1739 0.0143 0.3902 1.3 6knc:B
5 8ur2:B 99 42 0.1739 0.1616 0.3810 2.2
6 5f55:A 705 85 0.2391 0.0312 0.2588 2.2 5f54:A, 5f56:A, 6lrd:A
7 4ryk:A 295 67 0.1739 0.0542 0.2388 4.2
8 2bvf:A 453 68 0.2283 0.0464 0.3088 4.4 2bvf:B, 2bvg:A, 2bvg:B, 2bvg:C, 2bvg:D, 2bvh:A, 2bvh:B, 2bvh:C, 2bvh:D
9 7mq8:LU 445 53 0.1848 0.0382 0.3208 5.5 7mq9:LU, 7mqa:LU
10 7bxq:A 399 26 0.1196 0.0276 0.4231 5.7 7bxq:B, 7bxr:A, 7bxr:B, 7bxs:A, 7bxs:B
11 3geh:A 442 58 0.2174 0.0452 0.3448 6.6
12 1y07:C 124 71 0.2065 0.1532 0.2676 6.8 1y07:A, 1y07:B, 1y07:D
13 8w7g:A 390 45 0.1522 0.0359 0.3111 7.2
14 3zyy:X 628 56 0.1848 0.0271 0.3036 7.8 4c1n:J, 4c1n:I, 4c1n:K, 4c1n:X, 3zyy:Y
15 7xc4:A 127 21 0.1087 0.0787 0.4762 9.5 7xc4:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218