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BioLiP
>protein
MLILTRKVGESINIGDDITITILGVSGQQVRIGINAPKDVAVHREEIYQRIQAGLTAPD

The query sequence (length=59) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2mf0:A 59 59 1.0000 1.0000 1.0000 3.06e-37 2jpp:A, 2jpp:B, 2mf0:B, 2mf0:C, 2mf0:D, 2mf0:E, 2mf0:F, 2mf1:A, 2mf1:B, 2mf1:C, 2mf1:D, 2mf1:E, 2mf1:F, 2mfc:A, 2mfc:C, 2mfe:A, 2mfe:C, 2mff:A, 2mff:C, 2mfg:A, 2mfg:C, 2mfh:A, 2mfh:C
2 7yr6:E 55 52 0.6780 0.7273 0.7692 2.28e-26 7yr6:D, 7yr6:C, 7yr6:B, 7yr7:F, 7yr7:E, 7yr7:G, 7yr7:B, 7yr7:C, 7yr7:D
3 4kji:B 65 63 0.3220 0.2923 0.3016 0.037 4kji:A
4 4rk9:A 384 31 0.1695 0.0260 0.3226 0.66 4rk9:B
5 2idv:A 177 37 0.2034 0.0678 0.3243 4.7
6 3c5m:B 378 38 0.2203 0.0344 0.3421 7.6 3c5m:A, 3c5m:C
7 5j6c:A 173 28 0.1864 0.0636 0.3929 10.0 5j6c:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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