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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MLILAIISLITFVSMSKLSDNRAIIRLINIYLILVLVLDSFLYLLFLNNQTYTVMGELLIFNSFTFYIDMLIYFIMIVIS
SLYGYNLYNNNLYKTLFEPKKELIILFLINILGALLIVHSNDFITLFVAIELQSYSIYLITAIYNSSYKASKASMLYFFM
GGILSILIAYSINTYLNLILIALSLGLLFKIGIAPLHKWLISIYENTPILITIYISLIPKISILSYLVLSNISINSLVIS
ILAILTLLVGSVGGLLQIKIKRLLAFSGLTNAGYMMLLLLLNNNEFSYLYYITQYSISHLAIFMIIIFSIYYINYINNQY
NPIIYVNQLKGLIHDNAYLVLSMAIVVFSFIGIPPLLGFFGKLNILMSILNNGYYFISIVLIVASLISALYYLYLLNVSI
QDKNNILINSNETVSSVLSYILSSLIILITFGFIYNSLIIDIFNVYFN

The query sequence (length=448) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7zkq:2 448 448 1.0000 1.0000 1.0000 0.0
2 7o6y:2 469 469 1.0000 0.9552 0.9552 0.0 7o71:2, 6rfq:2, 6rfr:2, 6y79:2, 7zkp:2
3 7zmb:2 558 370 0.2835 0.2276 0.3432 6.38e-52 7zme:2, 7zmg:2, 7zmh:2
4 8qby:N 479 328 0.1920 0.1795 0.2622 5.93e-35
5 7aqq:N 488 344 0.2188 0.2008 0.2849 7.04e-33 7a23:I, 7a24:I, 7ar7:N, 7ar8:N, 8bef:N, 8bpx:N
6 6l7o:B 493 383 0.2188 0.1988 0.2559 1.81e-23 6l7p:B
7 5gup:i 347 299 0.1451 0.1873 0.2174 1.03e-11 7v2c:i, 7v2d:i, 7v2e:i, 7v2f:i, 7v2h:i, 7v2k:i, 7v2r:i, 7v30:i, 7v31:i, 7v32:i, 7v33:i, 7v3m:i, 7vbl:i, 7vbp:i, 7vc0:i, 7vwl:i, 7vxs:i, 7vy1:i, 7vy9:i, 7vye:i, 7vyg:i, 7vyi:i, 7vys:i, 7vz8:i, 7vzv:i, 7vzw:i, 7w00:i, 7w0h:i, 7w0r:i, 7w0y:i, 7w1o:i, 7w1p:i, 7w1t:i, 7w1u:i, 7w1v:i, 7w1z:i, 7w20:i, 7w2k:i, 7w2r:i, 7w2u:i, 7w2y:i, 7w31:i, 7w32:i, 7w35:i, 7w4c:i, 7w4d:i, 7w4e:i, 7w4f:i, 7w4g:i, 7w4j:i, 7w4k:i, 7w4l:i, 7w4m:i, 7w4n:i, 7w4q:i
8 8iaq:N 344 188 0.1116 0.1453 0.2660 4.94e-11 8ib6:N, 8ibb:N, 8ibf:N, 8ic4:N
9 7qso:N 347 303 0.1562 0.2017 0.2310 5.32e-10 7r41:N, 7r42:N, 7r44:N, 7r45:N, 7r47:N, 7r48:N, 7r4c:N, 7r4d:N, 7r4f:N, 7r4g:N, 6zkm:N, 6zkn:N, 6zku:N, 6zkv:N
10 5xtc:i 347 193 0.1094 0.1412 0.2539 5.24e-09 5xtd:i, 5xth:i, 5xti:i, 5xti:Bi
11 5lnk:L 599 339 0.1853 0.1386 0.2448 2.28e-07
12 7v2h:l 606 346 0.1808 0.1337 0.2341 7.70e-06 7vc0:l, 7vy1:l, 7vys:l, 7w0h:l, 7w2l:l, 7w2r:l, 7w2y:l, 7w32:l, 7w4q:l
13 7a23:a 600 341 0.1808 0.1350 0.2375 9.45e-06
14 3rko:L 612 259 0.1339 0.0980 0.2317 1.51e-05 3rko:B
15 8e9g:L 625 189 0.1116 0.0800 0.2646 5.12e-05 8e9h:L, 8e9i:L
16 8bpx:L 665 291 0.1540 0.1038 0.2371 8.65e-05 8bef:L
17 6tjv:F 600 205 0.1183 0.0883 0.2585 0.001
18 6l7o:F 647 245 0.1250 0.0866 0.2286 0.008 6l7p:F
19 8e9i:M 518 138 0.0737 0.0637 0.2391 0.039 8e9g:M, 8e9h:M
20 6rfq:4 486 339 0.1897 0.1749 0.2507 0.20 6rfr:4, 6y79:4
21 3rko:M 504 237 0.1071 0.0952 0.2025 0.58 3rko:C
22 7enc:0 306 37 0.0290 0.0425 0.3514 0.67 1g25:A, 8gxq:HD, 8gxs:HD, 6nmi:H, 7nvw:3, 7nvx:3, 7nvy:3, 7nvz:3, 8wak:0, 8wal:0, 8wan:0, 8wao:0, 8wap:0, 8waq:0, 8war:0, 8was:0
23 6rfq:5 654 282 0.1562 0.1070 0.2482 1.4 7o6y:5, 6rfr:5
24 8qby:L 659 89 0.0625 0.0425 0.3146 2.0 8qc1:L
25 7zme:5 670 313 0.1540 0.1030 0.2204 4.3 7zmg:5
26 8xxn:3B 536 89 0.0469 0.0392 0.2360 5.7 6zon:B, 6zp4:B, 6zvj:B
27 8pj1:1 588 89 0.0469 0.0357 0.2360 6.8 6fec:w, 2krb:A, 8oz0:I, 8pj2:1, 8pj3:1, 8pj5:1, 8pj6:1
28 8iru:R 268 38 0.0201 0.0336 0.2368 6.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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