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BioLiP
>protein
MLIKKIEELKNSEIKDIIDKRIQEFKSFKNKSNEEWFKELCFCILTANFTAEGGIRIQKEIGDGFLTLPREELEEKLKNL
GHRFYRKRAEYIVLARRFKNIKDIVESFENEKVAREFLVRNIKGIGYQEASHFLRNVGYDDVAIIDRHILRELYENNYID
EIPKTLSRRKYLEIENILRDIGEEVNLKLSELDLYIWYLRTGKVLK

The query sequence (length=206) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3knt:A 207 206 1.0000 0.9952 1.0000 3.31e-147 3knt:C, 3knt:B, 3knt:D
2 8bux:A 289 132 0.1262 0.0900 0.1970 0.12
3 7mq8:NH 1066 30 0.0728 0.0141 0.5000 0.31 7mqa:NH
4 5a9g:A 206 82 0.1214 0.1214 0.3049 0.48 5a9g:B, 6gsb:A, 6gsb:B, 6gsc:A, 6gsc:B
5 1dd4:A 128 41 0.0631 0.1016 0.3171 3.7 1dd4:B, 4v4p:AI, 1zav:U, 1zav:W, 1zaw:U, 1zaw:W, 1zax:U, 1zax:W
6 8fmw:AR 117 34 0.0631 0.1111 0.3824 3.8 8fn2:R
7 5wtz:A 420 68 0.1117 0.0548 0.3382 4.5 5h04:A, 5wu0:A
8 7m95:B 167 36 0.0534 0.0659 0.3056 4.6 7m93:A, 7m93:B, 7m93:C, 7m93:D, 7m94:A, 7m94:B, 7m94:C, 7m94:D, 7m95:A, 7m96:A, 7m96:B, 7m96:C, 7m96:D, 7mfi:A, 7mfi:B, 7mfi:C, 7mfi:D
9 8squ:A 372 75 0.1019 0.0565 0.2800 4.7
10 2as8:A 222 35 0.0583 0.0541 0.3429 5.2 2as8:B, 3f5v:A, 3f5v:B, 5vcn:A, 5vcn:B, 5vco:E, 5vco:F, 5vpg:A, 5vph:A
11 8ffi:A 419 75 0.1019 0.0501 0.2800 5.9 8ffi:E, 8ffi:I, 8ffi:M, 8i87:G, 8i87:O, 8i87:A, 8i87:C, 8j7s:B, 8j7s:F, 8j7s:J, 8j7s:N, 8jr8:B, 8jr8:D, 8oz6:A, 8oz6:C, 8oz6:E, 8oz6:G, 8ozd:A, 8ozd:C, 8oze:E, 8oze:G, 8ozf:A, 8ozf:C, 8ozf:F, 8ozf:H, 8ozg:A, 8ozg:C, 8ozg:F, 8ozg:H, 8ozi:A, 8ozi:C, 8ozi:E, 8ozi:G, 8sp0:A, 8sp0:E, 8sp3:A, 8sp3:E, 8spo:A
12 8spo:M 394 61 0.0874 0.0457 0.2951 6.3 8spo:E
13 7ziu:B 606 77 0.0922 0.0314 0.2468 7.2 7ziu:A
14 2ce7:D 413 47 0.0728 0.0363 0.3191 9.3 2ce7:A, 2ce7:B, 2ce7:E, 2ce7:F, 2cea:A, 2cea:B, 2cea:D, 2cea:E, 2cea:F
15 3kds:E 427 47 0.0728 0.0351 0.3191 9.3 2ce7:C, 2cea:C, 3kds:F, 3kds:G, 7tdo:A, 7tdo:B, 7tdo:C, 7tdo:D, 7tdo:E, 7tdo:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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