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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MLIIIGEKINGTIPSVKKAIEAKDEKLIRDLALRQSEAGADYIDVCASTSPELEVETLQWLMDIVQEATDTPLCIDSPNP
RAIQQVLLYAKRPGLINSVSLEGDKCEVIFPLIQGTWQVIALTCDNSGIPQDVQSRVEIAQALVEKAQSYDIAQERIHID
PLVIALSADNGALLKFAEATRQIKANYPMINVTSGLSNISFGMPLRKVVNQNFLTLAMFAGMDSAILDPLNRDLLAALLA
TEALLGRDKHCRNFANAYRKNKIGPLK

The query sequence (length=267) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4o1e:A 271 268 1.0000 0.9852 0.9963 0.0 4o1e:B, 4o1f:A, 4o1f:B
2 2yck:X 272 263 0.3408 0.3346 0.3460 3.38e-48 2yci:X, 2ycj:A
3 4djd:A 262 260 0.3146 0.3206 0.3231 1.79e-44 4djd:B, 4dje:A, 4dje:B, 4djf:A, 4djf:B, 2e7f:A, 2e7f:B, 2ogy:A, 2ogy:B
4 3bof:A 560 252 0.2622 0.1250 0.2778 9.87e-21 3bof:B, 3bol:A, 3bol:B, 1q8j:A, 1q8j:B
5 5voo:A 282 238 0.2322 0.2199 0.2605 1.18e-18 5voo:B, 5voo:C, 5voo:D, 5voo:E, 5voo:F, 5vop:A, 5vop:B
6 8g3h:A 841 238 0.2135 0.0678 0.2395 4.71e-13
7 3k13:C 287 251 0.2659 0.2474 0.2829 1.10e-09 3k13:A, 3k13:B
8 4ccz:A 611 174 0.1798 0.0786 0.2759 3.33e-08
9 7xg9:A 286 79 0.0861 0.0804 0.2911 0.10 7xg9:B, 7xlf:A, 7xlf:B
10 8a22:AG 121 84 0.0749 0.1653 0.2381 0.92 8apn:AG, 8apo:AG
11 7yvb:A 471 64 0.0712 0.0403 0.2969 1.7 7yvb:B, 7yvb:C
12 3rg1:C 138 43 0.0599 0.1159 0.3721 3.3 3rg1:O, 3rg1:D, 3rg1:H, 3rg1:L, 3rg1:P
13 4bbm:A 314 35 0.0412 0.0350 0.3143 6.1 4aaa:A, 4bbm:B
14 8k3b:A 281 39 0.0637 0.0605 0.4359 8.3 8ju9:A
15 1dqg:A 134 44 0.0487 0.0970 0.2955 9.2 1dqo:A, 1fwu:A, 1fwv:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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