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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MLHLLEQIRAYCETCWEWQEAHEPGNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTN
DHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVK
ALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE
DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM
ANRPAKYK

The query sequence (length=328) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5iz8:A 343 333 1.0000 0.9563 0.9850 0.0 5b6g:A, 7f6m:A, 7f7o:A, 8gsj:A, 5iz6:A, 5iz8:B, 5iz9:A, 5iza:A, 3nmx:A, 3nmx:B, 3nmx:C, 3qhe:A, 3qhe:C, 4yje:A, 4yjl:A, 4yjl:C, 4yjl:D, 4yjl:E, 4yjl:B, 4yjl:F, 4yk6:A, 5z8h:A
2 6s9o:F 343 306 0.2409 0.2303 0.2582 1.03e-04 5aei:A, 5aei:B, 5aei:C, 5mfd:A, 5mfd:C, 5mfd:E, 5mfd:I, 5mfd:G, 5mfd:J, 5mfd:K, 5mfd:L, 5mfe:A, 5mfe:B, 5mfe:C, 5mfe:D, 5mff:A, 5mff:B, 5mff:C, 5mff:D, 5mfg:A, 5mfh:A, 5mfh:B, 5mfh:C, 5mfh:D, 5mfl:A, 5mfl:B, 5mfl:C, 5mfm:A, 5mfm:B, 5mfm:C, 5mfm:E, 5mfm:D, 5mfm:F, 5mfn:B, 5mfn:A, 5mfo:A, 5mfo:C, 5mfo:E, 6s9l:A, 6s9l:B, 6s9m:A, 6s9m:E, 6s9m:B, 6s9m:C, 6s9m:D, 6s9m:F, 6s9n:A, 6s9n:E, 6s9n:B, 6s9n:C, 6s9n:F, 6s9n:D, 6s9o:A, 6s9o:B, 6s9o:C, 6s9o:D, 6s9o:E
3 3l6x:A 434 256 0.1951 0.1475 0.2500 0.001 3l6y:A, 3l6y:C, 3l6y:E
4 6kbn:C 504 276 0.2226 0.1448 0.2645 0.001 6kbm:A, 6kbn:A
5 6kbn:C 504 170 0.1341 0.0873 0.2588 0.095 6kbm:A, 6kbn:A
6 6kbn:C 504 84 0.0640 0.0417 0.2500 0.21 6kbm:A, 6kbn:A
7 4bqk:A 424 236 0.1738 0.1344 0.2415 0.020 4b8o:A, 4b8p:A, 4b8p:B, 4bpl:A, 4bqk:B, 2yns:A, 2yns:B
8 6ro8:A 413 78 0.0640 0.0508 0.2692 4.4
9 5ksw:B 262 108 0.0915 0.1145 0.2778 5.5 5ksw:D, 5ue9:B, 5ue9:D
10 6qhd:B 532 115 0.1006 0.0620 0.2870 6.9
11 7dvq:K 188 119 0.0854 0.1489 0.2353 7.2
12 8hn3:A 80 63 0.0640 0.2625 0.3333 8.2 8hn3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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