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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MLGLKTSIIGRRVIYFQEITSTNEFAKTSYLEEGTVIVADKQTMGHGRLNRKWESPEGGLWLSIVLSPKVPQKDLPKIVF
LGAVGVVETLKEFSIDGRIKWPNDVLVNYKGIAGVLVEGKGDKIVLGIGLNVNNKVPNGATSMKLELGSEVPLLSVFRSL
ITNLDRLYLNFLKNPMDILNLVRDNMILGVRVKILGDGSFEGIAEDIDDFGRLIIRLDSGEVKKVIYGDVSLRFL

The query sequence (length=235) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2deq:A 235 235 1.0000 1.0000 1.0000 1.11e-167 2deq:B, 2djz:A, 2djz:B, 2dkg:A, 2dkg:B, 2dth:A, 2dth:B, 2dti:A, 2dti:B, 2dto:A, 2dto:B, 2dve:A, 2dve:B, 2dxt:A, 2dxt:B, 2dxu:A, 2dxu:B, 2dz9:A, 2dz9:B, 2e41:A, 2e41:B, 2ejf:A, 2ejf:B, 2ejg:A, 2ejg:B, 2fyk:A, 2fyk:B, 1wnl:A, 1wnl:B, 1wpy:A, 1wpy:B, 1wqw:A, 1wqw:B, 1x01:A, 1x01:B, 2zgw:A, 2zgw:B
2 6ndl:A 323 239 0.3064 0.2229 0.3013 2.00e-27 6apw:A, 6aqq:A, 4dq2:A, 8eni:A, 4ha8:A, 6oru:A, 3rir:A, 3rkw:A, 3rky:A, 3v7c:A, 3v7r:A, 3v7s:A, 3v8k:A, 3v8l:A
3 3efr:A 233 233 0.3319 0.3348 0.3348 2.26e-25 3efr:B, 3efs:A, 3efs:B
4 2ej9:A 237 203 0.3064 0.3038 0.3547 3.28e-24
5 7dbs:A 252 172 0.2128 0.1984 0.2907 5.59e-15 6jhu:A
6 8fi3:B 308 237 0.3234 0.2468 0.3207 1.92e-14 8fi3:A
7 2ewn:A 318 235 0.3191 0.2358 0.3191 2.83e-14 2ewn:B, 1hxd:A, 1hxd:B, 4wf2:A
8 9j8e:B 296 242 0.2809 0.2230 0.2727 2.36e-13 9j8e:A
9 4xtu:A 266 223 0.3021 0.2669 0.3184 2.87e-13 4op0:A, 4op0:B, 3rux:A, 3rux:B, 4xtu:B, 4xtv:A, 4xtv:B, 4xtw:A, 4xtw:B, 4xtx:A, 4xtx:B, 4xty:A, 4xty:B, 4xtz:A, 4xtz:B, 4xu0:A, 4xu0:B, 4xu1:A, 4xu1:B, 4xu2:A, 4xu2:B, 4xu3:A, 4xu3:B
10 1bib:A 294 220 0.2766 0.2211 0.2955 4.66e-11
11 6ck0:B 210 123 0.1745 0.1952 0.3333 2.34e-08 6ck0:A
12 4fns:A 718 56 0.0766 0.0251 0.3214 2.0 4fns:B, 4fns:C, 4fns:D, 4fnt:C, 4fnt:B, 4fnt:A, 4fnt:D, 4fnu:A, 4fnu:B, 4fnu:C, 4fnu:D
13 8em4:A 3818 60 0.0766 0.0047 0.3000 3.3 8em4:B
14 8em7:A 4378 60 0.0766 0.0041 0.3000 3.3 8em7:B, 8jut:A, 8jut:B, 8juu:B, 8juu:A, 8jx8:B, 8jx8:A, 8jx9:B, 8jxa:A, 8jxb:A, 8jxd:A, 8jxe:A, 8jxe:B, 8jxf:B, 8jxg:A, 8jxh:A, 8jxi:B
15 6jmg:A 267 82 0.1021 0.0899 0.2927 4.3 6jmg:B
16 3tii:B 313 56 0.0596 0.0447 0.2500 5.3 3tig:A, 3tii:A, 3tin:A
17 6idn:A 272 81 0.1064 0.0919 0.3086 7.4
18 4kpp:A 395 67 0.0681 0.0405 0.2388 8.0 4kpp:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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