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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MLGAIAYTGNKQSLLPELKSHFPKYNRFVDLFCGGLSVSLNVNGPVLANDIQEPIIEMYKRLINVSWDDVLKVIKQYKLS
KTSKEEFLKLREDYNKTRDPLLLYVLHFHGFSNMIRINDKGNFTTPFGKRTINKNSEKRFNHFKQNCDKIIFSSLHFKDV
KILDGDFVYVDPPYLITVADYNKFWSEDEEKDLLNLLDSLNDRGIKFGLSNVLEHHGKENTLLKEWSKKYNVKHLNNGTD
EVYIFN

The query sequence (length=246) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1yf3:A 259 259 0.9959 0.9459 0.9459 1.23e-177 1q0s:A, 1q0t:A, 1q0t:B, 1yf3:B, 1yfj:A, 1yfj:B, 1yfj:C, 1yfj:D, 1yfj:E, 1yfj:F, 1yfl:A, 1yfl:B, 1yfl:D, 1yfl:E
2 4rtl:A 254 233 0.2561 0.2480 0.2704 3.48e-20 2g1p:A, 2g1p:B, 4gbe:D, 4gbe:E, 4gbe:F, 4gol:D, 4gol:E, 4gol:F, 4gom:D, 4gom:E, 4gom:F, 4gon:D, 4gon:E, 4gon:F, 4goo:D, 4goo:E, 4goo:F, 2ore:D, 2ore:E, 2ore:F, 4rtj:A, 4rtk:A, 4rtm:A, 4rtn:A, 4rto:A, 4rtp:A, 4rtq:A, 4rtr:A, 4rts:A
3 2dpm:A 258 260 0.2805 0.2674 0.2654 8.72e-15
4 7xe4:F 1503 61 0.0854 0.0140 0.3443 0.45 7yuy:F
5 8jzn:A 1489 61 0.0854 0.0141 0.3443 0.49
6 4ov9:A 380 65 0.0813 0.0526 0.3077 1.8 4ov4:A
7 7b0n:G 694 38 0.0488 0.0173 0.3158 2.5 6gcs:A, 7o6y:A, 7o71:A, 6rfq:A, 6rfr:A, 6rfs:A, 6y79:A, 6yj4:G
8 6x6x:A 417 94 0.0935 0.0552 0.2447 4.3 2wn6:A, 2wn7:A, 6x6r:A, 6x6r:B, 6x6v:A, 6x6v:B, 6x6v:C, 6x6v:D, 6x6x:B
9 4maf:B 404 78 0.0854 0.0520 0.2692 4.7 4maf:A, 4maf:C, 4maf:D, 4maf:E, 4maf:F, 4maf:G, 4maf:H
10 3ua3:A 662 39 0.0528 0.0196 0.3333 4.8 3ua3:B
11 2a3l:A 616 40 0.0569 0.0227 0.3500 5.0
12 7myv:B 239 22 0.0447 0.0460 0.5000 6.3 7myv:A
13 3jsp:A 194 29 0.0488 0.0619 0.4138 8.4 3jso:A, 3jso:B, 3jsp:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218