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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MLGAIAYTGNKQSLLPELKSHFPKYNRFVDLFCGGLSVSLNVNGPVLANDIQEPIIEMYKRLINVSWDDVLKVIKQYKLS
KTSKEEFLKLREDYNKTRDPLLLYVLHFHGFSNMIRINDKGNFTTPFGKRTINKNSEKQYNHFKQNCDKIIFSSLHFKDV
KILDGDFVYVDPPYLITVADYNKFWSEDEEKDLLNLLDSLNDRGIKFGQSNVLEHHGKENTLLKEWSKKYNVKHLEVYIF
N

The query sequence (length=241) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1yf3:A 259 242 0.9710 0.9035 0.9669 1.55e-171 1q0s:A, 1q0t:A, 1q0t:B, 1yf3:B, 1yfj:A, 1yfj:B, 1yfj:C, 1yfj:D, 1yfj:E, 1yfj:F, 1yfl:A, 1yfl:B, 1yfl:D, 1yfl:E
2 4rtl:A 254 233 0.2614 0.2480 0.2704 1.01e-19 2g1p:A, 2g1p:B, 4gbe:D, 4gbe:E, 4gbe:F, 4gol:D, 4gol:E, 4gol:F, 4gom:D, 4gom:E, 4gom:F, 4gon:D, 4gon:E, 4gon:F, 4goo:D, 4goo:E, 4goo:F, 2ore:D, 2ore:E, 2ore:F, 4rtj:A, 4rtk:A, 4rtm:A, 4rtn:A, 4rto:A, 4rtp:A, 4rtq:A, 4rtr:A, 4rts:A
3 2dpm:A 258 250 0.2780 0.2597 0.2680 1.51e-13
4 7xe4:F 1503 61 0.0871 0.0140 0.3443 0.46 7yuy:F
5 8jzn:A 1489 61 0.0871 0.0141 0.3443 0.54
6 6s04:B 497 58 0.0664 0.0322 0.2759 0.87 6s00:A, 6s00:B, 6s04:A, 6s0e:A, 6s0e:B, 6s0f:A, 6s0f:B
7 4ov9:A 380 65 0.0830 0.0526 0.3077 1.9 4ov4:A
8 7b0n:G 694 38 0.0498 0.0173 0.3158 2.4 6gcs:A, 7o6y:A, 7o71:A, 6rfq:A, 6rfr:A, 6rfs:A, 6y79:A, 6yj4:G
9 2a3l:A 616 40 0.0581 0.0227 0.3500 4.7
10 3jsp:A 194 29 0.0498 0.0619 0.4138 7.0 3jso:A, 3jso:B, 3jsp:B
11 3crw:1 485 71 0.0996 0.0495 0.3380 7.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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