Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MLDLFTLSFSPDLSIASEAEQLTLQSKDDRLILEHPQPGLRTALEQLKQGNLTLAQLTELVSEQDGVEAGITFASELEKL
VDLGWICHSVLPLITAIPIAKDYELNVPDSSWQTTAIALSRFAFLHQDLQQLVLESPRSKSKLVILDWRVGAVIAKLAQS
DRGFIFATSADSLLADLSLELEELKRLFALLIATQMMDLEPEDETITQWKFHNLLFHHYTRLLNLPVFEHRDRYPYVKPV
ISTQAIPLVKPDLTALATTDMTLTEAIETRRSIREYSDQPITLAQLGEFLYRCARVKAVYTLPEDPMQVGESTTRPYPSG
GALYELEIYPLVHQCGDLAAGLYHYQPLSHTLHPVADWTPEVESLVYDAWRATGQQSIPQIVLIITARFGRLFWKYHDIA
YSLILKHVGVLYQTFYLVATAMQLAPSAIGAGNTTKFCQIAGLNPDEEASVGEFSLGAAKPQQQS

The query sequence (length=465) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5lq4:B 465 465 1.0000 1.0000 1.0000 0.0 5lq4:A, 8pz5:A, 8pz5:B
2 6grh:C 266 132 0.0989 0.1729 0.3485 1.41e-10 6gos:C, 6grg:C, 6gri:C
3 3eo7:A 487 153 0.0946 0.0903 0.2876 8.27e-08
4 3hj9:A 215 216 0.1204 0.2605 0.2593 2.66e-06 3hj9:B
5 7ly7:B 329 182 0.0925 0.1307 0.2363 8.88e-04 7ly4:A, 7ly4:D, 7ly5:B, 7ly6:A
6 8cqs:B 194 187 0.0882 0.2113 0.2193 0.002 8cqs:A
7 4dn2:A 191 26 0.0280 0.0681 0.5000 0.43 4dn2:B
8 4g8s:A 182 26 0.0280 0.0714 0.5000 0.77 4g8s:B
9 6kux:A 375 51 0.0323 0.0400 0.2941 1.0 6kuy:A
10 9ijd:R 252 95 0.0516 0.0952 0.2526 1.5 9ije:R
11 7ezx:O3 375 45 0.0301 0.0373 0.3111 1.5 7ezx:OO, 6kgx:b1, 6kgx:o1, 6kgx:b4, 6kgx:o4, 7liz:A, 7y4l:Y7, 7y4l:b7, 7y5e:YP, 7y5e:bP, 7y7a:YL, 7y7a:bL, 7y7a:bU, 7y7a:YU
12 8fy8:R 286 51 0.0323 0.0524 0.2941 2.3 7e2x:R, 7e2y:R, 7e2z:R, 8fye:R, 8fyl:R, 8fyt:R, 8fyx:R, 8jsp:R, 8jt6:R, 8pjk:R, 8pkm:R, 8w8b:R
13 3gr3:A 226 49 0.0366 0.0752 0.3469 2.4 3gr3:B
14 4ylr:A 331 41 0.0323 0.0453 0.3659 3.0 4yls:A
15 8euy:b 120 39 0.0258 0.1000 0.3077 3.6
16 6m4f:C 543 61 0.0495 0.0424 0.3770 3.6 6m4e:A, 6m4f:E, 6m55:A, 6m55:D
17 8h8j:C 283 60 0.0366 0.0601 0.2833 6.7
18 7atm:A 478 58 0.0387 0.0377 0.3103 7.6 7kiv:A, 7kiw:A, 7lc4:A, 7ly1:A, 3pbo:A
19 7stm:A 801 40 0.0301 0.0175 0.3500 8.0 7stm:B, 7stn:A, 7stn:B, 7sto:B, 7sto:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218