Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVSIPNLLTSLQNEWDAIMLENFKLRSTLDS
LTKKLSTVMYERDAAKLVAAQLLMEKNEDSKDLPKSSQKNLELLQAQNYSRNIKTFPYKELNKSMYYDKWVCMCRCEDGA
LHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNTEYF
IWADNRGTIGFQQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYW
MVVECDQTVVCFDLRKDVGTLAYPTYTIGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLADFTDM
DVVCGDGGIAAILKTNDSFNIVALTP

The query sequence (length=426) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5lj5:v 426 426 1.0000 1.0000 1.0000 0.0
2 5yzg:s 374 85 0.0751 0.0856 0.3765 9.38e-09
3 5yzg:s 374 68 0.0423 0.0481 0.2647 0.92
4 5t2a:7 308 62 0.0423 0.0584 0.2903 0.010 6az1:g, 8ovj:Sg, 8rxh:Sg
5 2c2l:A 281 72 0.0540 0.0819 0.3194 0.11 2c2l:B, 2c2l:C, 2c2l:D, 6efk:B, 6efk:A, 8ehz:A, 8ehz:B, 8ei0:A, 8f14:A, 8f15:A, 8f15:B, 8f15:C, 8f16:A, 8f16:B, 8f17:A, 8f17:B, 8fyu:B, 8fyu:A, 8gck:B, 8gck:A, 6nsv:A, 6nsv:B, 3q47:B, 3q49:B, 3q4a:B, 8suv:A, 8suv:B, 8suv:C, 8suv:D, 7tb1:B, 7tb1:A
6 8qfn:A 155 102 0.0610 0.1677 0.2549 0.69 8qfl:A, 8qfl:B, 8qfm:A, 8qfm:B, 8qfn:B, 8qfo:A, 8qfo:B, 8qfp:A, 8qfp:B, 8qfq:A, 8qfq:B, 8qfr:A, 8qfr:B
7 1y80:A 125 30 0.0305 0.1040 0.4333 0.74
8 7ase:p 310 67 0.0469 0.0645 0.2985 0.93 5opt:p
9 6irw:A 494 108 0.0657 0.0567 0.2593 1.0 6irw:B
10 4v8m:A7 314 67 0.0446 0.0605 0.2836 1.5 8ove:A7
11 3nr1:A 178 137 0.0798 0.1910 0.2482 1.6 3nr1:B, 5vxa:A, 5vxa:B
12 8jiw:Bg 271 96 0.0540 0.0849 0.2396 1.9
13 4rib:B 628 57 0.0352 0.0239 0.2632 2.6 4ri8:A, 4ri8:B, 4ri9:A, 4ri9:B, 4ria:A, 4ria:B, 4rib:A, 4ric:A, 4ric:B
14 4rec:A 593 57 0.0352 0.0253 0.2632 2.7 4rea:B, 4rea:A
15 4reb:A 566 57 0.0352 0.0265 0.2632 2.7
16 7olc:A 312 64 0.0352 0.0481 0.2344 4.8 7old:A, 8oo0:A, 7r81:h2, 7z3n:A, 7z3o:A
17 4bxf:A 425 35 0.0305 0.0306 0.3714 5.2 4bxf:B
18 5xxb:N 200 46 0.0399 0.0850 0.3696 5.6
19 8c3a:AR 311 67 0.0329 0.0450 0.2090 6.1 8c3a:DT, 8cq7:AR, 8cq7:DT, 8cqw:AR, 8cqw:DT, 8cre:AR, 8cre:DT, 8oeq:AR, 8oeq:DT, 7pzy:h, 7q08:h, 7q0f:h, 7q0p:h, 7q0r:h
20 3vh0:A 322 42 0.0305 0.0404 0.3095 8.2 3vh0:D
21 3uul:A 115 47 0.0376 0.1391 0.3404 9.3
22 7mq8:LT 869 128 0.0610 0.0299 0.2031 9.8 7mq9:LT

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218