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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKYQQLENLECGWKWAYLIRKHQEGEPITKYIENSAAHAAVDKLIKLESEPVRVLEWIEQHMNPDLFNRMKQTIRARRKR
HFNAEHQHTRKKSIDLDFPVWHRLSALSQRRGNTLSETIVQLIEDAERKEKYAN

The query sequence (length=134) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7nyw:J 135 134 1.0000 0.9926 1.0000 5.19e-99 7nyw:I, 7nyx:I, 7nyx:J, 7nyz:I, 7nyz:J, 7nz0:I, 7nz0:J, 7nz2:I1, 7nz2:J1, 7nz2:I2, 7nz2:J2, 7nz2:I3, 7nz2:J3, 7nz2:I4, 7nz2:J4, 7nz3:I2, 7nz3:J2, 7nz3:I1, 7nz3:J1
2 3veb:B 150 134 0.7687 0.6867 0.7687 8.90e-76 3vea:B, 3vea:A, 3veb:A
3 4d8j:A 149 134 0.7836 0.7047 0.7836 1.66e-75 4d8j:B, 4d8j:C, 4d8j:D, 4d8j:H, 4d8j:G, 4d8j:K, 4d8j:L
4 7ufr:A 1038 64 0.1194 0.0154 0.2500 2.1 7ufr:B, 7ufr:C, 7ufr:D, 7ufu:A, 7ufu:B, 7ufu:C, 7ufu:D
5 2sqc:A 623 38 0.0970 0.0209 0.3421 2.3 1gsz:A, 1gsz:B, 1gsz:C, 1h35:A, 1h35:B, 1h35:C, 1h36:A, 1h36:B, 1h36:C, 1h37:A, 1h37:B, 1h37:C, 1h39:A, 1h39:B, 1h39:C, 1h3a:A, 1h3a:B, 1h3a:C, 1h3b:A, 1h3b:B, 1h3b:C, 1h3c:A, 1h3c:B, 1h3c:C, 1o6h:A, 1o6h:B, 1o6h:C, 1o6q:A, 1o6q:B, 1o6q:C, 1o6r:A, 1o6r:B, 1o6r:C, 1o79:A, 1o79:B, 1o79:C, 2sqc:B, 1ump:A, 1ump:B, 1ump:C
6 2dki:A 615 65 0.1269 0.0276 0.2615 3.8 2dkh:A
7 6fyx:I 188 71 0.1343 0.0957 0.2535 4.0 6fyy:I, 6gsm:I, 6gsn:I, 8i7j:I, 5it7:I, 5it9:I, 3j80:I, 3j81:I, 3jam:I, 3jap:I, 8rw1:I, 8s8d:I, 8s8e:I, 8s8f:I, 8s8g:I, 8s8h:I, 8s8i:I, 8s8j:I, 6uz7:I
8 1t10:A 556 39 0.0970 0.0234 0.3333 5.2
9 2jcb:A 194 35 0.0970 0.0670 0.3714 6.8 2jcb:B
10 7kc4:D 278 30 0.0821 0.0396 0.3667 8.6
11 5fc1:A 426 29 0.0746 0.0235 0.3448 8.9 5fc5:A, 5fc6:A, 5fc7:A, 5fca:A, 5fca:B, 5fcb:A, 8w6p:A, 8w6p:B, 8w6r:A
12 7wh9:A 476 24 0.1045 0.0294 0.5833 9.5 7wh9:B, 7wh9:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218