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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKYMITSKGDEKSDLLRLNMIAGFGYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRPA
EADKLVKLLAKGEYQKVSYPLLKTTVKYGKKEATYLALNESTVKSSGGPFVVDVVINDIHFERFRGDGLCMSTPSGTTAY
NKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVNDKDFQISVDHLSILHRDVQEIRYEVSAKKI
HFARFRSFPFWRRVHDSFIE

The query sequence (length=260) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2i2a:A 264 263 1.0000 0.9848 0.9886 0.0 8a9v:A, 8b47:A, 8b47:B, 5dhp:A, 5dhp:C, 5dhp:B, 5dhp:D, 5dhq:A, 5dhq:C, 5dhq:B, 5dhq:D, 5dhr:A, 5dhr:C, 5dhr:B, 5dhr:D, 5dhs:A, 5dhs:C, 5dhs:B, 5dhs:D, 5dht:A, 5dht:C, 5dht:B, 5dht:D, 5dhu:A, 5dhu:C, 5dhu:B, 5dhu:D, 4dy6:A, 5ejh:A, 5eji:A, 2i29:A, 2i2b:A, 2i2c:A, 2i2d:A, 2i2f:A, 2q5f:A, 6rbo:A, 6rbp:A, 6rbq:A, 6rbr:A, 6rbs:A, 6rbt:A, 6rbu:A, 6rbv:A, 6rbw:A, 6rbx:A, 6rby:A, 6rbz:A, 6rc0:A, 6rc1:A, 6rc2:A, 6rc3:A, 6rc4:A, 6rc5:A, 6rc6:A, 6rg6:A, 6rg7:A, 6rg8:A, 6rg9:A, 6rga:A, 6rgb:A, 6rgc:A, 6rgd:A, 6rge:A, 6rgf:A, 6rr2:A, 3v7u:A, 3v7w:A, 3v7y:A, 3v80:A, 3v8m:A, 3v8n:A, 3v8p:A, 3v8q:A, 3v8r:A, 6z61:A, 6z64:A, 6z65:A, 7zz7:A, 7zz9:A, 7zza:A, 7zzb:A, 7zzc:A, 7zzd:A, 7zze:A, 7zzf:A, 7zzg:A, 7zzh:A, 7zzj:A
2 7mh7:A 290 149 0.1769 0.1586 0.3087 3.51e-14 7qvs:A, 7qvs:B
3 1y3i:A 231 222 0.2269 0.2554 0.2658 6.73e-12 1y3i:B
4 1suw:A 249 190 0.2077 0.2169 0.2842 2.33e-10 1suw:D, 1suw:B, 1suw:C, 1z0s:A, 1z0s:D, 1z0s:B, 1z0s:C, 1z0u:A, 1z0u:B, 1z0z:A, 1z0z:D, 1z0z:B, 1z0z:C
5 3afo:A 360 169 0.1462 0.1056 0.2249 8.62e-08 3afo:B
6 7n29:B 350 159 0.1538 0.1143 0.2516 0.93 7n29:A, 7n29:C, 7n29:D, 7r4j:A, 7r4k:A, 7r4l:A, 7r4m:A
7 6w29:A 545 110 0.1154 0.0550 0.2727 1.8 6w49:A, 6w53:A, 6w56:A, 6w57:A, 6w59:A
8 4y7o:A 239 54 0.0654 0.0711 0.3148 2.4 4y7l:A, 4y7o:B
9 4yzg:A 294 118 0.1000 0.0884 0.2203 4.7 4yzg:B, 4yzh:A
10 4ttq:A 201 43 0.0615 0.0796 0.3721 8.5 4ttr:A
11 5uvm:A 115 24 0.0308 0.0696 0.3333 8.7 5uvm:B
12 4qtq:A 209 66 0.0731 0.0909 0.2879 9.0
13 5v9x:A 772 59 0.0577 0.0194 0.2542 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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