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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MKYILVTGGVISGIGKGVIASSVGTILKSCGLHVTSIKIDPYINIDAGTFSPYEHGEVFVLDDGGEVDLDLGNYERFLDI
RLTKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDAIQEWVMRQALIPVDEDGLEPQVCVIELGGTVGDIESMPFI
EAFRQFQFKVKRENFCNIHVSLVPQPSSTGEQKTKPTQNSVRELRGLGLSPDLVVCRCSNPLDTSVKEKISMFCHVEPEQ
VICVHDVSSIYRVPLLLEEQGVVDYFLRRLDLPLMKWKEMADRYDRLLETCSIALVGKYTKFSDSYASVIKALEHSALAI
NHKLEIKYIDSTDLEPSTLQEEPVRYHEAWQKLCSAHGVLVPGGFGVRGTEGKIQAIAWARKQKKPFLGVCLGMQLAVVE
FSRNVLGWQDANSTEFDPKTSHPVVIDMPTMRLGKRRTLFQTKNSVMRKLYGDTDYLEERHRHRFEVNPVLKKCLEEQGL
KFVGQDVEGERMEIVELEDHPFFVGVQYHPEFLSRPIKPSPPYFGLLLASVGRLPHYLQK

The query sequence (length=540) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5u03:A 559 557 0.9815 0.9481 0.9515 0.0 7mgz:F, 7mgz:P, 7mgz:O, 7mgz:Q, 7mh0:A, 7mh0:B, 7mh0:C, 7mh0:D, 7mif:C, 7mif:G, 7mif:H, 7mif:I, 7mig:C, 7mig:A, 7mig:B, 7mig:E, 7mip:C, 7mip:D, 7mip:G, 7mip:I, 5u03:B, 5u03:C, 5u03:D
2 6pk4:A 559 557 0.7741 0.7478 0.7504 0.0 7mh1:H, 7mh1:J, 7mh1:K, 7mh1:L, 7miu:D, 7miu:C, 7miu:H, 7miu:G, 7miv:D, 7miv:C, 7miv:H, 7miv:G, 6pk4:B, 6pk4:C, 6pk4:D, 6pk7:A, 6pk7:D, 6pk7:E, 6pk7:F
3 7mii:A 497 540 0.7259 0.7887 0.7259 0.0 7mih:A, 7mih:B, 7mih:C, 7mih:E, 7mii:B, 7mii:C, 7mii:E
4 7dpt:A 556 557 0.6852 0.6655 0.6643 0.0 7dpt:B, 7dpt:C, 7dpt:D, 7dpw:A, 7dpw:B, 7dpw:C, 7dpw:D, 8i0h:A, 8i0i:A, 8i0i:C, 8i0i:D, 8i0i:E, 7wiz:A, 7wiz:B, 7wiz:C, 7wiz:D, 7wj4:D, 7wj4:A, 7wj4:B, 7wj4:C
5 7rmc:V 561 551 0.6000 0.5775 0.5880 0.0 7rmc:D, 7rmc:F, 7rmc:E, 7rmc:g, 7rmc:Q, 7rmc:U, 7rmc:S, 7rmc:h, 7rmc:R, 7rmc:W, 7rmc:T, 7rmk:R, 7rmk:K, 7rmk:L, 7rmk:M, 7rmk:Y, 7rmk:I, 7rmk:P, 7rmk:U, 7rmk:D, 7rmk:A, 7rmk:B, 7rmk:C, 7rmk:Z, 7rmk:J, 7rmk:Q, 7rmk:V, 7rmk:H, 7rmk:E, 7rmk:F, 7rmk:G, 7rmk:a, 7rmk:N, 7rmk:S, 7rmk:W, 7rmk:b, 7rmk:O, 7rmk:T, 7rmk:X, 7rmo:D, 7rmo:A, 7rmo:B, 7rmo:C, 7rmo:U, 7rmo:I, 7rmo:M, 7rmo:Q, 7rmo:V, 7rmo:J, 7rmo:N, 7rmo:R, 7rmo:H, 7rmo:E, 7rmo:F, 7rmo:G, 7rmo:W, 7rmo:K, 7rmo:O, 7rmo:S, 7rmo:b, 7rmo:Y, 7rmo:Z, 7rmo:a, 7rmo:X, 7rmo:L, 7rmo:P, 7rmo:T, 7rmv:B, 7rmv:A, 7rmv:D, 7rmv:C, 7rmv:F, 7rmv:E, 7rmv:H, 7rmv:G
6 7rkh:D 559 555 0.5852 0.5653 0.5694 0.0 7rkh:C, 7rkh:A, 7rkh:B, 7rl0:A, 7rl0:D, 7rl0:B, 7rl0:C, 7rl0:E, 7rl0:H, 7rl0:F, 7rl0:G, 7rl0:W, 7rl0:Z, 7rl0:X, 7rl0:Y, 7rl5:A, 7rl5:B, 7rl5:D, 7rl5:C, 7rl5:E, 7rl5:M, 7rl5:R, 7rl5:P, 7rl5:L, 7rl5:O, 7rl5:S, 7rl5:Q, 7rnl:B, 7rnl:C, 7rnl:D, 7rnl:A, 7rnl:H, 7rnl:K, 7rnl:N, 7rnl:E, 7rnl:I, 7rnl:L, 7rnl:O, 7rnl:F, 7rnl:J, 7rnl:M, 7rnl:P, 7rnl:G, 7rnr:A, 7rnr:B, 7rnr:F, 7rnr:E, 7rnr:Q, 7rnr:S, 7rnr:a, 7rnr:Y, 7rnr:I, 7rnr:J, 7rnr:N, 7rnr:M, 7rnr:R, 7rnr:T, 7rnr:b, 7rnr:Z, 7rnr:g, 7rnr:h, 7rnr:l, 7rnr:k
7 1vco:A 531 549 0.4759 0.4840 0.4681 3.21e-164 1vcn:A
8 4zdj:A 535 538 0.4574 0.4617 0.4591 8.20e-161 4zdk:A, 4zdk:B
9 2vo1:A 235 273 0.4296 0.9872 0.8498 3.52e-159
10 8fve:B 538 547 0.4426 0.4442 0.4369 4.81e-155 2ad5:A, 2ad5:B, 8fv6:AAA, 8fv6:BBB, 8fv7:AAA, 8fv7:BBB, 8fv8:AAA, 8fv8:BBB, 8fv9:AAA, 8fv9:BBB, 8fva:AAA, 8fva:BBB, 8fvb:AAA, 8fvb:BBB, 8fvc:AAA, 8fvc:BBB, 8fvd:A, 8fvd:B, 8fve:A, 8i9o:A, 8i9o:B, 8i9o:D, 8i9o:C, 1s1m:A, 1s1m:B, 8sbr:A, 8sbr:B, 5tkv:A, 5tkv:B, 5u3c:A, 5u3c:B, 5u3c:C, 5u3c:D, 5u6r:A, 5u6r:B, 5u6r:C, 5u6r:D
11 3ihl:A 233 273 0.3574 0.8283 0.7070 1.81e-135 3ihl:B
12 5n29:A 265 257 0.1907 0.3887 0.4008 9.25e-55
13 7uoo:x 504 75 0.0370 0.0397 0.2667 0.72 7ohq:x, 7oht:x, 7uqb:x, 7uqz:x, 7v08:x, 4wjv:C, 4wjv:D, 4wjv:A, 4wjv:B, 6ylg:x, 6ylh:x
14 6vtv:B 252 112 0.0574 0.1230 0.2768 0.93 6vtv:A
15 3fij:A 224 152 0.0704 0.1696 0.2500 2.5 3fij:B, 3fij:C, 3fij:D, 3fij:E, 3fij:F, 3fij:G, 3fij:H
16 4evi:A 360 79 0.0370 0.0556 0.2532 5.5 4e70:A, 4e70:B, 4evi:B
17 6zj3:SA 221 127 0.0556 0.1357 0.2362 5.7
18 7yc6:A 183 81 0.0407 0.1202 0.2716 6.0
19 8guh:A 394 110 0.0537 0.0736 0.2636 7.2 3a2b:A, 8h1q:A, 8h1y:A, 8h20:A, 8h21:A, 8h29:A, 8iyp:A, 8iyt:A
20 8rbx:f 544 18 0.0204 0.0202 0.6111 7.7 8rbz:f
21 6rop:B 831 31 0.0204 0.0132 0.3548 8.3
22 5my0:A 852 31 0.0204 0.0129 0.3548 8.9 5my0:C, 5my0:D, 5my2:D, 6rop:A, 6rop:C, 6rop:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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