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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKYILVTGGVISGIGKGIIASSIGTILKSCGLRVTAIKIDPYINIDAGTFSPYEHGEVFVLNDGGEVDLDLGNYERFLDI
NLYKDNNITTGKIYQHVINKERRGDYLGKTVQVVPHITDAVQEWVMNQAKVPVDGNKEEPQICVIELGGTIGDIEGMPFV
EAFRQFQFKAKRENFCNIHVSLVPQLSATGEQKTKPTQNSVRALRGLGLSPDLIVCRSSTPIEMAVKEKISMFCHVNPEQ
VICIHDVSSTYRVPVLLEEQSIVKYFKERLHLPIGDSASNLLFKWRNMADRYERLQKICSIALVGKYTKLRDCYASVFKA
LEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKLCKADGILVPGGFGIRGTLGKLQAISWARTKKIPFLGVCL
GMQLAVIEFARNCLNLKDADSTEFRPNAPVPLVIDMPEHNPGNLGGTMRLGIRRTVFKTENSILRKLYGDVPFIEERHRH
RFEVNPNLIKQFEQNDLSFVGQDVDGDRMEIIELANHPYFVGVQFHPEFSSRPMKPSPPYLGLLLAATGNLNAYLQQ

The query sequence (length=557) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6pk4:A 559 557 1.0000 0.9964 1.0000 0.0 7mh1:H, 7mh1:J, 7mh1:K, 7mh1:L, 7miu:D, 7miu:C, 7miu:H, 7miu:G, 7miv:D, 7miv:C, 7miv:H, 7miv:G, 6pk4:B, 6pk4:C, 6pk4:D, 6pk7:A, 6pk7:D, 6pk7:E, 6pk7:F
2 7mii:A 497 556 0.8923 1.0000 0.8939 0.0 7mih:A, 7mih:B, 7mih:C, 7mih:E, 7mii:B, 7mii:C, 7mii:E
3 5u03:A 559 557 0.7648 0.7621 0.7648 0.0 7mgz:F, 7mgz:P, 7mgz:O, 7mgz:Q, 7mh0:A, 7mh0:B, 7mh0:C, 7mh0:D, 7mif:C, 7mif:G, 7mif:H, 7mif:I, 7mig:C, 7mig:A, 7mig:B, 7mig:E, 7mip:C, 7mip:D, 7mip:G, 7mip:I, 5u03:B, 5u03:C, 5u03:D
4 7dpt:A 556 557 0.6607 0.6619 0.6607 0.0 7dpt:B, 7dpt:C, 7dpt:D, 7dpw:A, 7dpw:B, 7dpw:C, 7dpw:D, 8i0h:A, 8i0i:A, 8i0i:C, 8i0i:D, 8i0i:E, 7wiz:A, 7wiz:B, 7wiz:C, 7wiz:D, 7wj4:D, 7wj4:A, 7wj4:B, 7wj4:C
5 7rmc:V 561 568 0.5601 0.5561 0.5493 0.0 7rmc:D, 7rmc:F, 7rmc:E, 7rmc:g, 7rmc:Q, 7rmc:U, 7rmc:S, 7rmc:h, 7rmc:R, 7rmc:W, 7rmc:T, 7rmk:R, 7rmk:K, 7rmk:L, 7rmk:M, 7rmk:Y, 7rmk:I, 7rmk:P, 7rmk:U, 7rmk:D, 7rmk:A, 7rmk:B, 7rmk:C, 7rmk:Z, 7rmk:J, 7rmk:Q, 7rmk:V, 7rmk:H, 7rmk:E, 7rmk:F, 7rmk:G, 7rmk:a, 7rmk:N, 7rmk:S, 7rmk:W, 7rmk:b, 7rmk:O, 7rmk:T, 7rmk:X, 7rmo:D, 7rmo:A, 7rmo:B, 7rmo:C, 7rmo:U, 7rmo:I, 7rmo:M, 7rmo:Q, 7rmo:V, 7rmo:J, 7rmo:N, 7rmo:R, 7rmo:H, 7rmo:E, 7rmo:F, 7rmo:G, 7rmo:W, 7rmo:K, 7rmo:O, 7rmo:S, 7rmo:b, 7rmo:Y, 7rmo:Z, 7rmo:a, 7rmo:X, 7rmo:L, 7rmo:P, 7rmo:T, 7rmv:B, 7rmv:A, 7rmv:D, 7rmv:C, 7rmv:F, 7rmv:E, 7rmv:H, 7rmv:G
6 7rkh:D 559 568 0.5512 0.5492 0.5405 0.0 7rkh:C, 7rkh:A, 7rkh:B, 7rl0:A, 7rl0:D, 7rl0:B, 7rl0:C, 7rl0:E, 7rl0:H, 7rl0:F, 7rl0:G, 7rl0:W, 7rl0:Z, 7rl0:X, 7rl0:Y, 7rl5:A, 7rl5:B, 7rl5:D, 7rl5:C, 7rl5:E, 7rl5:M, 7rl5:R, 7rl5:P, 7rl5:L, 7rl5:O, 7rl5:S, 7rl5:Q, 7rnl:B, 7rnl:C, 7rnl:D, 7rnl:A, 7rnl:H, 7rnl:K, 7rnl:N, 7rnl:E, 7rnl:I, 7rnl:L, 7rnl:O, 7rnl:F, 7rnl:J, 7rnl:M, 7rnl:P, 7rnl:G, 7rnr:A, 7rnr:B, 7rnr:F, 7rnr:E, 7rnr:Q, 7rnr:S, 7rnr:a, 7rnr:Y, 7rnr:I, 7rnr:J, 7rnr:N, 7rnr:M, 7rnr:R, 7rnr:T, 7rnr:b, 7rnr:Z, 7rnr:g, 7rnr:h, 7rnr:l, 7rnr:k
7 1vco:A 531 552 0.4596 0.4821 0.4638 8.56e-163 1vcn:A
8 3ihl:A 233 273 0.4183 1.0000 0.8535 2.77e-161 3ihl:B
9 8fve:B 538 550 0.4381 0.4535 0.4436 6.92e-155 2ad5:A, 2ad5:B, 8fv6:AAA, 8fv6:BBB, 8fv7:AAA, 8fv7:BBB, 8fv8:AAA, 8fv8:BBB, 8fv9:AAA, 8fv9:BBB, 8fva:AAA, 8fva:BBB, 8fvb:AAA, 8fvb:BBB, 8fvc:AAA, 8fvc:BBB, 8fvd:A, 8fvd:B, 8fve:A, 8i9o:A, 8i9o:B, 8i9o:D, 8i9o:C, 1s1m:A, 1s1m:B, 8sbr:A, 8sbr:B, 5tkv:A, 5tkv:B, 5u3c:A, 5u3c:B, 5u3c:C, 5u3c:D, 5u6r:A, 5u6r:B, 5u6r:C, 5u6r:D
10 4zdj:A 535 548 0.4201 0.4374 0.4270 1.49e-150 4zdk:A, 4zdk:B
11 2vo1:A 235 273 0.3483 0.8255 0.7106 2.83e-133
12 5n29:A 265 253 0.1741 0.3660 0.3834 2.60e-48
13 6vtv:B 252 191 0.0772 0.1706 0.2251 0.15 6vtv:A
14 7yc6:A 183 45 0.0287 0.0874 0.3556 3.1
15 3p19:A 239 51 0.0305 0.0711 0.3333 5.3 3p19:B, 3p19:C, 3p19:D
16 2oo0:A 419 61 0.0269 0.0358 0.2459 5.9 5bwa:A, 7odc:A, 2on3:A, 2on3:B, 2oo0:B, 7s3f:A, 7s3f:B, 7s3g:A, 7s3g:B, 7u6p:A, 7u6p:B, 7u6u:A, 7u6u:B, 4zgy:A
17 2bh2:A 418 61 0.0359 0.0478 0.3279 6.3 2bh2:B, 1uwv:A
18 5lr8:A 844 147 0.0664 0.0438 0.2517 7.5 5lr8:B, 5lra:A, 5lra:B, 5lrb:B, 5lrb:A
19 3uow:B 477 34 0.0180 0.0210 0.2941 7.8
20 3tqh:A 317 210 0.0898 0.1577 0.2381 8.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218