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BioLiP
>protein
MKWNLDPSHTSIDFKVRHMGIASVRGSLKVLSGSVETDEAGRPIQVEAVIDAASIATGEPQRDGHLRSADFLHAEQYPEI
RFVSTQIEPLGGNRYRIQGNLTIRDITKPVTLEAEVSAPIKDPWGMQRVAASASGQINRKDWNLTWNQVLELGALLVGEE
VKFNLEVEAVAPAPVA

The query sequence (length=176) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1wub:A 176 176 1.0000 1.0000 1.0000 1.76e-129
2 1y0g:A 169 163 0.3352 0.3491 0.3620 4.06e-30 1y0g:B, 1y0g:C, 1y0g:D
3 5w2r:A 171 168 0.2784 0.2865 0.2917 4.90e-29 5w2z:A, 5w30:A, 5w39:A, 5w3a:A, 5w3c:A
4 3hpe:A 164 171 0.3239 0.3476 0.3333 6.87e-28 3hpe:B
5 7bwl:A 168 163 0.3068 0.3214 0.3313 6.89e-25
6 5ixg:B 169 166 0.3068 0.3195 0.3253 1.38e-21 5ixg:C, 5ixg:A, 5ixg:D
7 5ixh:B 161 115 0.2045 0.2236 0.3130 3.95e-11 5ixh:A
8 1u02:A 229 72 0.1420 0.1092 0.3472 2.6
9 4ihb:E 126 48 0.0739 0.1032 0.2708 5.1 7jof:A, 7jof:B, 7jof:C, 7jof:D
10 7oyc:E1 214 21 0.0682 0.0561 0.5714 5.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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