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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKVSSRGPIVRWALSRPTSGLVSSPSEWRCGRDLSDEEKHSGLLLRIRDICQPLAKNDQLPVAVVKAQPSDLQVNEVDAV
GDVAALSKVVKGKWRKISRQKTLLIEDDARTPFSDPSKSFSPRVQSYGEYVRLTGKLPRDLPVLRFVLYRDSYSLNSVEN
RLGYVLSLQPDCVFLRDQPGGSFGCITQHGVCLGVTKEILSHASRHYNLHPLIFEPREYFSTDKLHSLLQGARGHHHRVL
LRCVEGSQDTIRALLKKTAERGFINYFWLDRFSVGTNRFFDMAVLAARGDYLKSIGALLHCVAESNGVHYDHFLKYLNAD
PSTVPGIAQTWATTAKHMRSPNWIVQLLRGLHKYHADAECGKSSYLAELWSALPMREALRRSAAEFVWNAMASQRLLSKG
LNVVEGDVVRMGNYHLVTKDDEEKGTFKITDVVLPVPYGSVAANNCLFPHLSPLDKKLYVEFATKHGMSFLFDEQMPSPL
SNPLQFYRHLITKPVNMQVSVIRDPNSLTSIKSDLAVMQERKLVQIGDIDYSTRVREPCVYNVSERFTEKMEEILKTHRG
PNSVVLSCYLPEDSSPFVMLREVFDLRHASFHDLYGLL

The query sequence (length=598) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6yxx:ED 598 598 1.0000 1.0000 1.0000 0.0 7aoi:XC, 6yxy:ED
2 7am2:CA 537 537 0.4114 0.4581 0.4581 6.16e-155
3 5cuo:B 189 83 0.0452 0.1429 0.3253 1.2 5cuo:A, 5cup:A, 5cup:B
4 8wdk:W 277 59 0.0268 0.0578 0.2712 1.7 8bju:A, 7n3u:A, 5v5y:A, 5vc3:A, 5vc4:A, 5vc5:A, 5vd2:A, 5vd4:A, 5vd5:A, 5vd7:A, 5vd8:A, 5vd9:A
5 7yyl:E 243 46 0.0234 0.0576 0.3043 2.8 7yyl:F, 7yyl:G, 7yyl:H, 7yzm:G, 7yzm:H, 7yzm:E, 7yzm:F, 7yzq:E, 7yzq:F, 7yzq:G, 7yzq:H
6 9de2:A 71 29 0.0217 0.1831 0.4483 8.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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